Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq169 87.8 1e-12 seq5 84.2 2e-11 >seq169 Length=6603 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| | || || ||| ||||| | ||||| ||| | Sbjct 5551 ATGCAAATTTTTGTTAAAACATTAACAGGAAAAACCATTACTCTCGATGTTGAACCATCT 5492 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || ||| |||||| || |||||||| |||| || | Sbjct 5491 GACACCATTGAGAAT--GTTAAAGCAAAAATTCAAGATAAAGAAGGAATTCCACCTGACC 5434 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | ||||| ||||||||||||||||| || |||| | | | | || ||||||| Sbjct 5433 AACAAAGATTAATATTTGCCGGAAAACAATTAGAGGACGGAAGAACTCTATCAGATTACA 5374 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 | || |||||||| ||| || || || || || Sbjct 5373 ATATTCAAAAAGAATCCACCTTACACTTAGTGTT 5340 >seq5 Length=2479031 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||||||||| ||||| | ||||| ||| ||||| ||||||| || Sbjct 2307827 AAAATGCAAATTTTTGTTAAAACATTAACTGGAAAAACAATTACCCTTGATGTTGAGCCA 2307768 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | || |||| | ||| || || |||||| || |||||||| |||| | Sbjct 2307767 TCTGATACGATTGAGAAT--GTGAAGGCAAAAATTCAAGATAAAGAAGGAATTCCACCTG 2307710 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||| | ||||| ||||| ||||||||||| || || | | | | || || |||| Sbjct 2307709 ATCAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGAACATTATCAGATT 2307650 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 | || || ||||| || || || || ||||| Sbjct 2307649 ATAATATTCAAAAGGAATCTACATTACACTTGGT 2307616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355858787218191