Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq169 123 6e-23 seq5 100 7e-16 >seq169 Length=6603 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | ||| | ||||| |||||||| || || ||||| | || || ||||| Sbjct 5336 TCTTAACACTAAGTGTAAGGTGGATTCTTTTTGAATATTGTAATCTGATAGAGTTCTTCC 5395 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 || || | || || || || || || | | |||||||||||| |||| |||||| || Sbjct 5396 GTCCTCTAATTGTTTTCCGGCAAATATTAATCTTTGTTGGTCAGGTGGAATTCCTTCTTT 5455 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || || ||| ||| || || || ||||||||||| |||||| |||||||| || Sbjct 5456 ATCTTGAATTTTTGCTTTAACATTCTCAATGGTGTCAGATGGTTCAACATCGAGAGTAAT 5515 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || | || || ||||| | ||||| Sbjct 5516 GGTTTTTCCTGTTAATGTTTTAACAAAAATTTGCAT 5551 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||||| || | ||| | || || || ||||| ||||| || || | | || ||| Sbjct 5562 AGTCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATGTTGTAGTCTGATAATGTTCTT 5621 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||| | || || || || || || | | |||||||||||| |||| |||||| Sbjct 5622 CCATCTTCTAATTGTTTTCCAGCAAATATTAATCTTTGTTGGTCAGGTGGAATTCCTTCT 5681 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 || || || || ||| || || || || || |||||||| || || || || || Sbjct 5682 TTATCTTGAATTTTTGCCTTTACATTCTCAATAGTGTCAGATGGCTCGACGTCAAGGGTT 5741 Query 211077 ATCGTCTTTCC 211087 || || ||||| Sbjct 5742 ATAGTTTTTCC 5752 >seq5 Length=2479031 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || || ||||| || |||||||| | | || ||||||||||| | || || || Sbjct 2307628 GTAGATTCCTTTTGAATATTATAATCTGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 2307687 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || | | |||||| ||||| |||| |||||| || || || || ||| ||| Sbjct 2307688 GCAAATATTAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTGAATTTTTGCCTTC 2307747 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || || || || ||||| ||||| || || || || || ||||| || | || Sbjct 2307748 ACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATTGTTTTTCCAGTTAATGTT 2307807 Query 211098 TTTACAAACACCTGCATTTT 211117 || ||||| | |||||||| Sbjct 2307808 TTAACAAAAATTTGCATTTT 2307827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159139628588045