Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq169 161 7e-35 seq5 120 2e-22 >seq169 Length=6603 Score = 161 bits (178), Expect = 7e-35 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| |||||||| | || |||||||| || |||||||| ||||| | | Sbjct 5551 ATGCAAATTTTTGTTAAAACATTAACAGGAAAAACCATTACTCTCGATGTTGAACCATCT 5492 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| ||||| |||||| || || |||||||| | || || || || Sbjct 5491 GACACCATTGAGAATGTTAAAGCAAAAA-TTCAAGATAAAGAAGGAATTCCACCTGACCA 5433 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | |||||||||||||| |||||| | || |||| | | ||| || |||||||| Sbjct 5432 ACAAAGATTAATATTTGCCGGAAAACAATTAGAGGACGGAAGAACTCTATCAGATTACAA 5373 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| ||||| ||||| ||||| ||||| || |||| || Sbjct 5372 TATTCAAAAAGAATCCACCTTACACTTAGTGTTAAGATTAAGAGGTGG 5325 Score = 109 bits (120), Expect = 4e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 23638 GGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAA 23697 |||||||| || || || || || || | | |||||| |||| | |||| |||| Sbjct 5752 GGAAAAACTATAACCCTTGACGTCGAGCCATCTGACACTATTGAGAATGTAAAGGCAAAA 5693 Query 23698 ATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAA 23757 ||| || |||||||| | || || || ||||| | ||||||||||| || |||||| Sbjct 5692 ATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCTGGAAAACAA 5633 Query 23758 CTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTA 23817 | ||||| | | | || ||| || |||||||| ||||| || || |||||||| ||| Sbjct 5632 TTAGAAGATGGAAGAACATTATCAGACTACAACATTCAAAAGGAATCTACATTACACTTA 5573 Query 23818 GTTTTAAG 23825 || ||||| Sbjct 5572 GTGTTAAG 5565 >seq5 Length=2479031 Score = 120 bits (132), Expect = 2e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| ||||| |||||||| | || |||||||| || || || || ||||| | Sbjct 2307827 AAAATGCAAATTTTTGTTAAAACATTAACTGGAAAAACAATTACCCTTGATGTTGAGCCA 2307768 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || |||| ||| | || |||||| || || |||||||| | || || || Sbjct 2307767 TCTGATACGATTGAGAATGTGAAGGCAAAAA-TTCAAGATAAAGAAGGAATTCCACCTGA 2307709 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| | ||||||||||| || |||||| | ||||| | | | || ||| ||||| Sbjct 2307708 TCAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGAACATTATCAGATTA 2307649 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819 || || ||||| || || |||||||| || || Sbjct 2307648 TAATATTCAAAAGGAATCTACATTACACTTGGT 2307616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338006168463164