Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq6 181 9e-41 >seq6 Length=2947581 Score = 181 bits (200), Expect = 9e-41 Identities = 567/865 (66%), Gaps = 21/865 (2%) Strand=Plus/Plus Query 4255 ATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATAT 4314 ||||||| || || | || | || ||||| || || ||||| |||| | ||||| Sbjct 127788 ATTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTTTCCTTGAAGTGAAATTA 127847 Query 4315 TTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAA 4374 ||||| ||| || ||||| ||| | | || ||| || || | | | | Sbjct 127848 AGTCCATCCAATTGAATGGATTTTTTGAATGGAAAATTTTAGAGCATCCTAAACATTCTA 127907 Query 4375 GCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA 4434 |||| || || |||||||||||||| || ||| ||| | || || || |||| Sbjct 127908 ATAATCTATCTGCAACAAATTCTATATATTGAGACATAAGTCTAGAATTCATACCTATTA 127967 Query 4435 ATCTCACA-GGTAGCGCGT---ATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTG 4490 | ||||| |||| | | || | ||| | |||| || | ||| |||||| | Sbjct 127968 AA-TCACATGGTAATGATTCACATATAAAAGA-TCTT--TCAACTTCTACAGCTTCTTTA 128023 Query 4491 ATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACAC 4550 | |||| || || | | || | ||||||| |||| | | | | | ||| || Sbjct 128024 ACAATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACTATAAATTAAGCAA 128083 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 |||||| ||| | ||||| ||||| || || | ||| ||| ||| ||||| || Sbjct 128084 TTAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTCATTACTAAATGTTAAACCA 128143 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 | | | | | ||||||| |||||| ||||| ||| ||| || ||||| Sbjct 128144 TGTAATTTATTTTGTTTTTTAAACCAAAAAATAGCACAAAAGCTACCACTGAATAATATT 128203 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATC 4730 ||||| || ||| ||||||| | | || || | | | || |||||| Sbjct 128204 CCTTCAACACATGCATTAGCTACTATCCTTTCAGCAAATGAATTAG---TATCATTAATC 128260 Query 4731 CATTTTAATGCCCAGTTAGCTTT-TTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA 4789 |||||| |||||| ||||| ||| ||| ||| || || | | |||||| | ||| Sbjct 128261 CATTTTGCTGCCCATAATGCTTTATTTTTTACTGCA-GGGATATTTTCTATAGCATGAAA 128319 Query 4790 TAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTC 4849 ||| || | |||| | |||| ||||||| | || |||| || ||||| |||| Sbjct 128320 TAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTTTC 128379 Query 4850 AGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTG 4909 ||||| |||||||||| ||| || ||||| ||||| | | |||||||||| ||| Sbjct 128380 TGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCTGTTATTTG 128439 Query 4910 AACTTCGTTACAAAATCTTTCTA-CTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAA 4968 ||| || | ||||| || ||| | || || || ||||||||| ||||| ||||||| Sbjct 128440 AACCTCTCTTAAAAAT-TTACTAGCCAAATTCTCTAATACTATACCATCACTTGCTGCAA 128498 Query 4969 AAAACGCCAAAACATGAGATATAAA---GTACTGTTCGTCAGGCTTAAGTTTTTTCCAGT 5025 |||| || || ||||| |||||| | || | |||| || | ||| | | | Sbjct 128499 AAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCA---TTCAATTTCTCAAAAT 128555 Query 5026 GGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTT 5085 ||||| ||| |||||||| |||||| | |||||||| || ||||| ||||| | Sbjct 128556 CTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAGCTTTCT 128615 Query 5086 TGTACATAGACCAAATATCAGGATA 5110 |||| | | ||||| |||||||| Sbjct 128616 TGTAAAAATCCCAAACTTCAGGATA 128640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427045264512389