Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq6 529 2e-145 >seq6 Length=2947581 Score = 529 bits (586), Expect = 2e-145 Identities = 1150/1700 (68%), Gaps = 42/1700 (2%) Strand=Plus/Plus Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 ||||| |||||| || || || || ||||| | ||||| ||||||| ||||||| Sbjct 1353392 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1353451 Query 76983 CAAATAGTTTTGAA-AACTTGTTTGATATCATCTGGAAGGT---TTGTATTTTGAATGGA 77038 || | |||||| | |||| ||| | |||||||| | | || ||| ||||| Sbjct 1353452 CATACTGTTTTGTACAACTCCTTTAAG-TCATCTGGTATTTCACTTATATATTGAAC--- 1353507 Query 77039 ACCACCATC-TGA--TAT-AATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTG 77094 || |||| ||| ||| |||||| | || || || |||| ||| || || || Sbjct 1353508 ACTTCCATTGTGAGCTATTAATTGTTGT-TTCATGTCTTCATCCCATAAACCTCTTTCAA 1353566 Query 77095 TTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAG 77154 |||| || | | | ||| |||||||| | |||||||||| || ||||| | | Sbjct 1353567 ATAAATCTTTTAACAAATGGGGATTAACAACGAAAAATTCTCCACTTAAAACTCTTCTAT 1353626 Query 77155 TGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAG 77214 ||||||||||| ||||||||||| | |||||||| ||||| | |||||| | ||||| Sbjct 1353627 AATAAATATTACTAGTATATGGTTCAAAGGATTCATTATTTCCAAGAATTTGTGAAGTAG 1353686 Query 77215 AAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTAT 77274 | ||||||||||||||||| | ||||| ||||| | |||||| | | |||||| Sbjct 1353687 ATGCAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGCTTACGAATTTTAG 1353746 Query 77275 CTTTTAGATATTTCCAATCCCAA-AGATCTGA--AGGTACAACATCCCAAAGATCGTATT 77331 |||||| | | |||||||||| | | | | | | | ||| ||| | ||| ||| Sbjct 1353747 CTTTTAATTCATCCCAATCCCAATATTTGTTATCAACTTTAGCATTCCACATATCAAATT 1353806 Query 77332 GTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAG 77391 ||| ||||| | ||||| ||| | ||| | |||||| ||||| | | | || Sbjct 1353807 GTAATATTCCTTGGCTAGCTGGACTTCCTTGATAGGATTCATATGGTCCATGTATAGAAG 1353866 Query 77392 CTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGA 77451 | | |||| | | ||| || || | || || |||||||| || || | ||||| | Sbjct 1353867 CCAATTCAACAGACATTTCTAAAGCAGCATAGTACATTGTTTCAAATATTCTTTTATTCA 1353926 Query 77452 GATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATC 77511 |||| ||| || | ||| | ||||| ||| | ||||| | ||||||||||| Sbjct 1353927 ATTCTTTTGCAGCATCAGATTCATATGGATATCTTAATAACATAAATGTATCTGCTAATC 1353986 Query 77512 CCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAG 77571 | || || ||||||||||||||||| ||||| ||||||| |||| || ||| | | Sbjct 1353987 CTTGTACACCAATACCAATAGGTCTGTGTCTAGTATTGGATGTTTTTGCCTCTTTGACTG 1354046 Query 77572 GATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCT 77631 | |||||||| | ||||||||||||| | |||||| || | |||| | || | Sbjct 1354047 GGTAATAATTTCTTTCTATAATTTTATCTAAATTTCTGGTAATAATTTTAGTAATTTCAT 1354106 Query 77632 TTAGTTTAAGAAAATCAAA-------TCTTCCATCTATAACAAACATGTTCAAAGCTATA 77684 || || ||||| ||| | ||||| | | ||||| | ||||||||| Sbjct 1354107 ATAACTTTTTAAAATTAAATTCTTTTTTTTCCAAATCT-ACAAATTTACATAAAGCTATA 1354165 Query 77685 GATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACAT 77744 ||||| | |||||| || || || |||| || | | ||||| ||| || || |||| Sbjct 1354166 GATGCCAAATTACATACAGCAACTTCATCAGGGGATGTATATTCTATAATTTCACAACAT 1354225 Query 77745 AGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCC 77804 | ||||||||||| ||||| || | ||||| ||| || || ||| || || || Sbjct 1354226 AAGTTACTACATTTAATAGTACCTAAATTTTTTTGATTAGATTTAGCATTACAAGAATCT 1354285 Query 77805 TTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACG 77864 ||||| | ||| | || || ||||| || || || | |||| ||| | Sbjct 1354286 TTATATAACATATATGGTACACCTGTTTCTATTTGGCTTTGTAATATAGCAAACCATAAA 1354345 Query 77865 ACTCTAGCTTTTATCATAGATTTGTATCGC---CTCTCTCTTTCATATTGAGTATATAGC 77921 || ||| | | | ||| | || | | ||| |||||||| |||||||| Sbjct 1354346 TCTTGAGC---AAGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATATAAT 1354402 Query 77922 CGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAAT 77981 ||||||||| || ||||| ||| || || || ||||||||||| ||||| | Sbjct 1354403 TTTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATTAGG 1354462 Query 77982 GACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATA 78041 | ||| | || ||| ||||||| |||||||| |||||||| | ||||| |||| | Sbjct 1354463 GTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCATAA 1354522 Query 78042 AATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCC 78101 |||| |||||| | ||| |||||| ||||| ||| || | | ||| | ||| || Sbjct 1354523 AATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGATTTTTCCTTAAATCTAAAAATTCA 1354582 Query 78102 ATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCT 78161 | ||||| |||||||||||||| | ||| | || | | ||| ||||| || Sbjct 1354583 AATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGATCCTTTACGTTTTCCTCCA 1354642 Query 78162 CCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTA 78221 || ||||||| |||||| || |||| |||| ||||||| ||||| || | | ||| ||| Sbjct 1354643 CCTTGATCTACATATCTTGCAGTGTCATTAAAAACTCTTAACATAGGTACTAAACCATTA 1354702 Query 78222 GATGTTCCATTTGTTCCAGAAATATA--ACTTCCACTTGCGCGAATATTACT--AATGGA 78277 ||| ||||||| || || |||||| | || ||| | ||| || | | Sbjct 1354703 GATATTCCATTGGTACCTCTAATATAAGAATT----TTGTCCTCTTATGTCTTGTACTGC 1354758 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 || || || |||||||| | ||| |||| ||| || |||| | || || | || Sbjct 1354759 TACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGAGTTTCAAAAAT 1354818 Query 78338 ACCCTCTATACTGTCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATG-ATGA 78395 ||| || ||| || | |||| | ||| ||| ||||| ||||||||| | || Sbjct 1354819 ACCTTCAATAGAATCTGCTTTCATCGATAATAAG-AAACAAGAAGACATTTGTGGTCTGG 1354877 Query 78396 ACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGA 78455 | || |||| |||||||||||| |||| |||||| || || |||| | ||| | || | Sbjct 1354878 GC-GTCCCTGAATTAAATAATGTAGGAGTTGCATGGGTGAAATATTTCTGAGACATTAAA 1354936 Query 78456 TTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATC 78515 | |||||||| | |||| ||||| || | ||| || || | | || | ||| Sbjct 1354937 TGATATGTTTCTAGAGCTTTATCTATATCATCTATATGTATACCAATAGAAACTCTCATT 1354996 Query 78516 AACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCC 78575 || | ||| ||||||||||||| | |||||||| || || || || ||| ||||| Sbjct 1354997 AATAAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTCC 1355056 Query 78576 AAAGTTTTAAAACCAAAATA 78595 || |||||||| |||||||| Sbjct 1355057 AAGGTTTTAAATCCAAAATA 1355076 Score = 237 bits (262), Expect = 2e-57 Identities = 593/882 (67%), Gaps = 48/882 (5%) Strand=Plus/Plus Query 47831 TTGAGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTT 47890 ||| | ||| ||||| ||||||||| || | || | |||||||||||| || ||||| Sbjct 127771 TTGGGCCATGACTCCTGATTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTT 127830 Query 47891 GCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAttttttt 47950 |||| | ||| || ||||| ||| |||||||| || || ||||||| Sbjct 127831 TCCTTGAAGTGAAATTAAGTCCATCCAATTGAATGGATTTTTTGAATGGAAAATTTTAGA 127890 Query 47951 AAATCCTAA---TTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCAT 48007 ||||||| |||| ||| | |||||||||||| |||||||||||| ||| | Sbjct 127891 GCATCCTAAACATTCT--AATAA-TCTATCTGCAACAAATTCTATATATTGAGACATAAG 127947 Query 48008 TTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTC-CGTAAGAAAC-TCTTGTTCG 48065 | | ||||||| ||||| | | | ||||| | || | || ||| |||| || Sbjct 127948 TCTAGAATTCATACCTATTAAATCACATGGTAATGATTCACATATAAAAGATCTT--TCA 128005 Query 48066 ATAGTGACAGCATCCACTATTATCGATGTT----ACCGTTTCCTC----ACTTGGTGGAT 48117 | ||||| || ||| | || || ||| ||| || | || | || Sbjct 128006 ACTTCTACAGCTTCT----TTAACAATATTTTGTACCATTTGTTCTGGAAGTTTATT-AT 128060 Query 48118 ACAACAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAA 48177 || ||| || | ||||| || |||||| ||| || |||||||||||||| | Sbjct 128061 CTAATAAAC---TATAAATTAAGCAATTAAAATCTGTATGTAGTCCTTCATCTCTACTTA 128117 Query 48178 TTAATTCGTTAGAAAATGTGAGACCGGGCA--TTAGTCCACGTTTTTTGAGCCAAAATAT 48235 ||||||| ||| |||||| | ||| | | ||| | ||||||| | |||||| || Sbjct 128118 TTAATTCATTACTAAATGTTAAACCATGTAATTTATTTT--GTTTTTTAAACCAAAAAAT 128175 Query 48236 TGCCGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGT-CTC 48293 || | |||| | ||| || ||||| ||||| || | |||| || | || Sbjct 128176 AGCA-CAAAAGCTACCACTGAATAATATTCCTTCAAC------ACATGCATTAGCTACTA 128228 Query 48294 TC---TCCGTAACTGGCTTCGTTGTGT--ATCCACCGTTGTGCCCAATCAGCCTTCTTCT 48348 || || | || || || || | ||||| | |||||| || || || | Sbjct 128229 TCCTTTCAGCAAATGAATTAGTATCATTAATCCATTTTGCTGCCCATAATGCTTTATTTT 128288 Query 48349 TTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtt--tttttCATTGCTATCTTT 48406 |||| ||| || |||||||||||| || | ||| || | |||| || |||||| Sbjct 128289 TTACTGCAGGGATATTTTCTATAGCATGAA--ATAAATTTAATCTTTCTTTTTCATCTTT 128346 Query 48407 AACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTG 48466 || ||| |||| ||||| | |||||| |||| || ||||||||||| | || || || Sbjct 128347 AATATAATTATCAATTAATAAACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTG 128406 Query 48467 AAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAA 48526 ||| ||||| | | |||||||| || || ||||| | ||||| |||||| Sbjct 128407 AAAAGAATAAAATTTTTTTGCTTCTGTTATTTGAACCTCTCTTAAAAATTTACTAGCCAA 128466 Query 48527 ATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATA 48586 |||||| |||||| |||||||| || |||||||||||||| ||||| || ||||||| Sbjct 128467 ATTCTCTAATACTATACCATCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATG 128526 Query 48587 TTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTC 48646 ||| || ||| | ||| ||| | | || || | ||| | |||| ||| | |||||| Sbjct 128527 TTTCTCATTGTCATTCAATTTCTCAAAATCTTTTAAATCGCTAGATAAATCAATTTCTTC 128586 Query 48647 AGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCA 48688 |||||||||||||| || || ||||| || || | || ||| Sbjct 128587 TGCTGTCCAAAATGAAGCTTCAGCTTTCTTGTAAAAATCCCA 128628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694661566761120