Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6 531 7e-146 >seq6 Length=2947581 Score = 531 bits (588), Expect = 7e-146 Identities = 1149/1698 (68%), Gaps = 38/1698 (2%) Strand=Plus/Plus Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 ||||| |||||| || || || || ||||| | ||||| ||||||| ||||||| Sbjct 1353392 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1353451 Query 75578 CAAATAGTTTTGAA-AACTTGTTTGATATCATCTGGAAGAT---TTGTATTTTGAATGGA 75633 || | |||||| | |||| ||| | |||||||| | | || ||| ||||| Sbjct 1353452 CATACTGTTTTGTACAACTCCTTTAAG-TCATCTGGTATTTCACTTATATATTGAACACT 1353510 Query 75634 TCCGCCATCAGATAT-AATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTA 75692 ||| | || ||| |||||| | || || || |||| ||| || ||| || || Sbjct 1353511 TCCATTGTGAGCTATTAATTGTTGT-TTCATGTCTTCATCCCATAAACCTCTTTCAAATA 1353569 Query 75693 AAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGT 75752 || || | | | ||| |||||||||| |||||||||| || ||||||| | | Sbjct 1353570 AATCTTTTAACAAATGGGGATTAACAACGAAAAATTCTCCACTTAAAACTCTTCTATAAT 1353629 Query 75753 AAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAG 75812 |||||||||| ||||||||||| | |||||||| ||||| | |||||| | ||| || | Sbjct 1353630 AAATATTACTAGTATATGGTTCAAAGGATTCATTATTTCCAAGAATTTGTGAAGTAGATG 1353689 Query 75813 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTT 75872 |||| ||||||||||| | ||||| ||||| | |||||| | | |||||| ||| Sbjct 1353690 CAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGCTTACGAATTTTAGCTT 1353749 Query 75873 TTAGATATTTCCAATCCCAA-AGATCTGATGG--TACAACATCCCAGAGATCGTATTGTA 75929 ||| | | |||||||||| | | | || | | ||| ||| | ||| |||||| Sbjct 1353750 TTAATTCATCCCAATCCCAATATTTGTTATCAACTTTAGCATTCCACATATCAAATTGTA 1353809 Query 75930 GAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTA 75989 ||||| | |||||| ||| | ||| | ||| || | || | | ||| | Sbjct 1353810 ATATTCCTTGGCTAGCTGGACTTCCTTGATAGGATTCATATGGTCCATGTATAGAAGCCA 1353869 Query 75990 GTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGAT 76049 ||| | | ||||| ||| | || || |||||||| || || | ||||| | | Sbjct 1353870 ATTCAACAGACATTTCTAAAGCAGCATAGTACATTGTTTCAAATATTCTTTTATTCAATT 1353929 Query 76050 CTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCT 76109 ||| || || | ||| | ||||| ||| | ||||||| |||||||| ||| | Sbjct 1353930 CTTTTGCAGCATCAGATTCATATGGATATCTTAATAACATAAATGTATCTGCTAATCCTT 1353989 Query 76110 GAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGT 76169 | || ||||||||||||||||| ||||| ||||||| ||| || ||| | |||| Sbjct 1353990 GTACACCAATACCAATAGGTCTGTGTCTAGTATTGGATGTTTTTGCCTCTTTGACTGGGT 1354049 Query 76170 AATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTA 76229 ||||||| | ||||||||||||| | ||||||| || | |||| | || | || Sbjct 1354050 AATAATTTCTTTCTATAATTTTATCTAAATTTCTGGTAATAATTTTAGTAATTTCATATA 1354109 Query 76230 GTTTGAGAAAATCAAATT-------TTCCATCTATCACAAACATATTAAGAGCTATAGAT 76282 || ||||| ||||| ||||| | | ||||| || | |||||||||| Sbjct 1354110 ACTTTTTAAAATTAAATTCTTTTTTTTCCAAATCT-ACAAATTTACATAAAGCTATAGAT 1354168 Query 76283 GCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGA 76342 || | |||||| || || || |||| || | ||||| ||| || || |||| Sbjct 1354169 GCCAAATTACATACAGCAACTTCATCAGGGGATGTATATTCTATAATTTCACAACATAAG 1354228 Query 76343 TTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTA 76402 |||||||| || ||||| || | ||||| ||| || || ||||| || || ||| Sbjct 1354229 TTACTACATTTAATAGTACCTAAATTTTTTTGATTAGATTTAGCATTACAAGAATCTTTA 1354288 Query 76403 TAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACT 76462 || | | | | || || ||||| || || || | |||| ||| | || Sbjct 1354289 TATAACATATATGGTACACCTGTTTCTATTTGGCTTTGTAATATAGCAAACCATAAATCT 1354348 Query 76463 CTAGCTTTTATTATAGATTTGTATCGC---TTCTCTCTTTCATATTGTGTATATAACCGT 76519 ||| | | | ||| | || | || ||| |||||||| |||||||| | Sbjct 1354349 TGAGCAAGAACTGT---TTTTTTTCCCATATTTTCTTCTTCATATTTAGTATATAATTTT 1354405 Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 |||||||| || ||||| ||| ||||| ||||||||||| |||||||| | | | Sbjct 1354406 TCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATTAGGGTC 1354465 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 || | || ||| ||||| | |||||||| |||||||| | ||||| |||| |||| Sbjct 1354466 CAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCATAAAAT 1354525 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 | |||||| | ||| |||||| ||||| ||| || | | ||||| || || | Sbjct 1354526 AAATCTCGTGCTCTTAATTCTTCTTTTCCATGATTTTTCCTTAAATCTAAAAATTCAAAT 1354585 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGT-CGTTTATTACCTCC 76758 ||||| |||||||||||||| | ||| | | || || | || | ||||| || || Sbjct 1354586 ATATCTGAATGCCATGGTTCAATATA-AACAGCAAAAGATCCTTTACGTTTTCCTCCACC 1354644 Query 76759 CTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGA 76818 ||||||| |||||| ||||||| |||| ||||||| ||||| || | | || ||||| Sbjct 1354645 TTGATCTACATATCTTGCAGTGTCATTAAAAACTCTTAACATAGGTACTAAACCATTAGA 1354704 Query 76819 TGTACCATTTGTTCCAGAAATATA--ACTTCCACATGCACGAATATTACTAATA--GATA 76874 | | ||||| || || |||||| | || || | ||| || || | || Sbjct 1354705 TATTCCATTGGTACCTCTAATATAAGAATT----TTGTCCTCTTATGTCTTGTACTGCTA 1354760 Query 76875 GGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGC 76934 || || |||||||| ||||| |||| |||||| |||| | || ||| | || | Sbjct 1354761 CACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGAGTTTCAAAAATAC 1354820 Query 76935 CCTCTATACTATCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATG-ATGAAC 76992 | || ||| ||| | |||| | ||| ||| ||||| ||||||||| | || | Sbjct 1354821 CTTCAATAGAATCTGCTTTCATCGATAATAAG-AAACAAGAAGACATTTGTGGTCTGGGC 1354879 Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 || |||| |||||| |||||||||| |||||| ||||| |||| | ||| | || || Sbjct 1354880 -GTCCCTGAATTAAATAATGTAGGAGTTGCATGGGTGAAATATTTCTGAGACATTAAATG 1354938 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 |||||||| | | || |||||||| | ||| || || | || || | ||| || Sbjct 1354939 ATATGTTTCTAGAGCTTTATCTATATCATCTATATGTATACCAATAGAAACTCTCATTAA 1354998 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 | ||| ||||||| ||| | | | |||||||| || || || || ||| ||||||| Sbjct 1354999 TAAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTCCAA 1355058 Query 77173 AGTTTTAAAACCAAAATA 77190 |||||||| |||||||| Sbjct 1355059 GGTTTTAAATCCAAAATA 1355076 Score = 224 bits (248), Expect = 1e-53 Identities = 402/577 (70%), Gaps = 20/577 (3%) Strand=Plus/Plus Query 46624 ATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAAT 46683 ||||| || |||||| ||| || |||||||||||||| |||||||| ||| |||| Sbjct 128075 ATTAAGCAATTAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTCATTACTAAAT 128134 Query 46684 GTGAGCCCAGGCA--TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCA 46740 || | ||| | | ||| | | ||||| | |||||| |||| | | |||| | ||| Sbjct 128135 GTTAAACCATGTAATTTATT--TTGTTTTTTAAACCAAAAAATAG-CACAAAAGCTACCA 128191 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTG-----G 46795 || ||||| ||||| ||| || || || | || || || | || || | Sbjct 128192 CTGAATAATATTCCTTCAACACATGCATTAGCTACTA-TC-CTTTCAGCAAATGAATTAG 128249 Query 46796 CATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTT 46855 |||||| |||||| || ||||| || || || ||||| ||| || ||| Sbjct 128250 TATCATT---AATCCATTTTGCTGCCCATAATGCTTTATTTTTTACTGCAGGGATATTTT 128306 Query 46856 CTATAGCATTAAAGAGAAAGtt--tttttCATCACTATCTTTAACATATGTATCTATTAA 46913 ||||||||| || | ||| || | |||| | |||||||| ||| |||| ||||| Sbjct 128307 CTATAGCATGAA--ATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAA 128364 Query 46914 AAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCT 46973 | |||||| ||||||||||||| ||||| | ||| || ||||| ||||| | | Sbjct 128365 TAAACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTT 128424 Query 46974 TGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCC 47033 |||||| || || || |||||| | ||||| || ||||||||| ||||| || Sbjct 128425 TGCTTCTGTTATTTGAACCTCTCTTAAAAATTTACTAGCCAAATTCTCTAATACTATACC 128484 Query 47034 ATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAG 47093 |||||| || ||||||||||| || ||||| || ||||||| ||| |||| | | ||| Sbjct 128485 ATCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAA 128544 Query 47094 TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGC 47153 ||| | | || || | ||| | |||| ||| | |||||| |||||||| ||||| || Sbjct 128545 TTTCTCAAAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGC 128604 Query 47154 CTCTGCTTTTTTATACATATTCCATATATCACGATAT 47190 || ||||| || || | || ||| | ||| ||||| Sbjct 128605 TTCAGCTTTCTTGTAAAAATCCCAAACTTCAGGATAT 128641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712926976570560