Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq169 104 5e-17 seq5 95.1 3e-14 >seq169 Length=6603 Score = 104 bits (114), Expect = 5e-17 Identities = 151/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || |||||||| || |||||||| | || |||||| || || |||| ||| ||| Sbjct 5355 GTGGATTCTTTTTGAATATTGTAATCTGATAGAGTTCTTCCGTCCTCTAATTGTTTTCCG 5414 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || | || || ||||| | | |||||||| || |||||||||||| ||| Sbjct 5415 GCAAATATTAATCTTTGTTGGTCAGGTGGAATTCCTTCTTTATCTTGAATTTTTGCTTTA 5474 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| |||| | | |||| || || || || |||||||| ||||| || || | || Sbjct 5475 ACATTCTCAATGGTGTCAGATGGTTCAACATCGAGAGTAATGGTTTTTCCTGTTAATGTT 5534 Query 152088 TTCACGAAGACCTGCATTTTACC-CTTACTCT 152118 || || || | ||||| ||| |||| ||| Sbjct 5535 TTAACAAAAATTTGCATACCACCTCTTAGTCT 5566 Score = 100 bits (110), Expect = 7e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||| || ||||| |||||||| || | ||| ||||| |||||||||| ||| || Sbjct 5583 GTAGATTCCTTTTGAATGTTGTAGTCTGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 5642 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || | || || ||||| | | |||||||| || |||||||||||| || Sbjct 5643 GCAAATATTAATCTTTGTTGGTCAGGTGGAATTCCTTCTTTATCTTGAATTTTTGCCTTT 5702 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCC 152077 ||| |||| | |||| || ||| || ||||| || |||||||| || Sbjct 5703 ACATTCTCAATAGTGTCAGATGGCTCGACGTCAAGGGTTATAGTTTTTCC 5752 >seq5 Length=2479031 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||| || ||||| || || ||||| | ||| ||||| |||||||||| ||| || Sbjct 2307628 GTAGATTCCTTTTGAATATTATAATCTGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 2307687 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || | || || || || | | |||||||| || |||||||||||| || Sbjct 2307688 GCAAATATTAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTGAATTTTTGCCTTC 2307747 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| |||| | | || || ||| || ||||| ||||| ||||| || || | || Sbjct 2307748 ACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATTGTTTTTCCAGTTAATGTT 2307807 Query 152088 TTCACGAAGACCTGCATTTT 152107 || || || | |||||||| Sbjct 2307808 TTAACAAAAATTTGCATTTT 2307827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153808485486943