Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq6 221 1e-52 >seq6 Length=2947581 Score = 221 bits (244), Expect = 1e-52 Identities = 562/833 (67%), Gaps = 43/833 (5%) Strand=Plus/Plus Query 23217 TTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATT 23276 ||||||||| || | || | | | |||||||| ||||| || || | | ||| || Sbjct 127789 TTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAA 127848 Query 23277 TTCCATAAAATCAAATGGATTA---GAA--GTATTATATACAGCTTTACATGATAATTCC 23331 ||||| ||| |||||||| ||| | | | || ||| | | | | |||| Sbjct 127849 GTCCATCCAATTGAATGGATTTTTTGAATGGAAAATTTTAGAGCAT--CCTAAACATTC- 127905 Query 23332 TTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATC-ATAGTTTATACC 23390 ||| | |||||||| |||||||| ||||||||| |||| || || | | || ||||| Sbjct 127906 --TAATAATCTATCTGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAATTCATACC 127962 Query 23391 TATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTT 23450 ||||| | ||| | | ||| ||| || | |||||| ||||| ||||| Sbjct 127963 TATTAAATCACATGGTAATGATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTT 128022 Query 23451 AATTAT---TTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAATAA 23507 || || ||| || || |||| | || | ||| | | | ||| || | ||| Sbjct 128023 AACAATATTTTGTACCATTTGTTCTGGA--AGTTTATTATCTAATAAACTATAA-ATTAA 128079 Query 23508 ACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAA 23567 || |||||| |||||| |||||||| ||||| || ||||||||| ||||||||| Sbjct 128080 GCAATTAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTCATTACTAAATGTTAA 128139 Query 23568 TCC-TGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGGAAAAG 23625 || || ||| || | ||||||||| |||||| || ||| |||| | | || || Sbjct 128140 ACCATGTAATTTATTTT-GTTTTTTAAACCAAAAAATAGCA-CAAAAGCTACCACTGAAT 128197 Query 23626 AAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCA 23685 || || || |||||| ||| || || | | | | |||||| |||| |||| Sbjct 128198 AATATTCCTTCAACACATGCATTAGCTACTATCCTTTCAGCAAATGA---ATTAGTATCA 128254 Query 23686 GAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACT-CA---ATTGTTTCAAT 23741 |||||||||| || ||| | | ||| | |||| ||| || || |||| || Sbjct 128255 TTAATCCATTTTGCTGCCCA-TAATGCTTTATTTTTT---ACTGCAGGGATATTTTCTAT 128310 Query 23742 TGCTTTTAAGAGAAAAGTTT----TTTCTTCATTATCTGTTATATATGTATCAATTAGTA 23797 || | || | || ||| |||||| | |||| | ||||| ||||||||| || Sbjct 128311 AGCAT----GAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATA 128366 Query 23798 AACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAG 23857 ||||||| |||| |||||||||||||| | ||| || ||||| |||||| | | | Sbjct 128367 AACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTG 128426 Query 23858 CTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCAT 23917 |||| | | |||||| || | |||||| | |||| ||||| || || ||||||| Sbjct 128427 CTTCTGTTATTTGAACCTCTCTTAAAAATTTACTAGCCAAATTCTCTAATACTATACCAT 128486 Query 23918 CACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGAT-AAT 23976 |||| || ||||| || || | |||| |||||||||||| | |||| || | ||| Sbjct 128487 CACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCAT-TGTCATTCAAT 128545 Query 23977 TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 || | |||| || | ||| | |||||||||| ||| || |||||||||| Sbjct 128546 TTCTCAAAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAA 128598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521482570006200