Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq9 141 1e-28 >seq9 Length=776283 Score = 141 bits (156), Expect = 1e-28 Identities = 288/419 (69%), Gaps = 18/419 (4%) Strand=Plus/Plus Query 50478 GATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAAAT-TG 50536 |||||||||||| |||| |||||||||||||||||||| ||||| || | |||| || Sbjct 511693 GATTTAGGACCTATTTATGGTTTTCAATGGAGACATTTCGGAGCTGAATATACAAATATG 511752 Query 50537 CGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGACGTTGAA 50596 | | | ||||| ||| | |||| || |||||| | ||||| ||||| | || | Sbjct 511753 C-ATGATAATTATGAAAATAAAGGTGTTGATCAATT---AAAAAATATAATAAATTTAAT 511808 Query 50597 AACAAACC--CCGACGA-TCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATATAGA 50653 | ||| || || | | | | ||| | || || |||||| || ||| | || Sbjct 511809 TAAAAATGATCCTACAAGTAGAAGAATTCTTTTGTGTGCATGGAATGTAAAAGATCTTGA 511868 Query 50654 TCAAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATG----CCACAGACAATG 50709 |||| | |||||||| |||||| |||||||||||||||||| | | || || Sbjct 511869 CCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTCGATGGAAAA-- 511926 Query 50710 TTTTATCCTGT-CAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAAC 50768 ||||| ||| ||| |||||||| ||| |||| | || |||| || ||||| || Sbjct 511927 --TTATCATGTATTATG-TATCAAAGGTCATGTGATTTAGGACTAGGAGTACCTTTTAAT 511983 Query 50769 GTAGCTTCTTACGCTTTATTAACGTATTTGATCGCTCAAGCCGTCGATATGAAACCGGGA 50828 | |||||||| || | || || || |||| || |||| | || || |||| | Sbjct 511984 ATTGCTTCTTATTCTATTTTTACTCATATGATTGCACAAGTCTGTAATTTGCAACCTGCC 512043 Query 50829 GAATTTATTCATACGTTAGGAGACGCTCATATTTACCTCGATCACGTCGATGCTTTAAA 50887 |||||||| || |||||| | || ||| |||| ||||| ||||| |||||| Sbjct 512044 GAATTTATACACGTTTTAGGAAATGCGCATGTTTATAATAATCACATCGATAGTTTAAA 512102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667068254079480