Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq169 147 5e-30 seq5 120 7e-22 >seq169 Length=6603 Score = 147 bits (162), Expect = 5e-30 Identities = 149/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | ||||||||||| || || ||||| || ||| || ||| Sbjct 5548 CAAATTTTTGTTAAAACATTAACAGGAAAAACCATTACTCTCGATGTTGAACCATCTGAC 5489 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || ||| ||| ||||| || ||||||||||| || || ||||| ||| Sbjct 5488 ACCATTGAGAATGTTAAAGCAAAAATTCAAGATAAAGAAGGAATTCCACCTGACCAACAA 5429 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||||||||| | || || ||||| ||||| | ||||| || | Sbjct 5428 AGATTAATATTTGCCGGAAAACAATTAGAGGACGGAAGAACTCTATCAGATTACAATATT 5369 Query 178104 CAAAAAGAATCAAC 178117 ||||||||||| || Sbjct 5368 CAAAAAGAATCCAC 5355 Score = 114 bits (126), Expect = 3e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 177947 AGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAA 178006 ||||||||| || ||||| || || || || ||||| || ||||| || || ||| Sbjct 5753 AGGAAAAACTATAACCCTTGACGTCGAGCCATCTGACACTATTGAGAATGTAAAGGCAAA 5694 Query 178007 GATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACA 178066 ||||| || ||||||||||| || || ||||| ||| || | || || || |||||||| Sbjct 5693 AATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCTGGAAAACA 5634 Query 178067 GCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCT 178126 | ||||||||||| || | | || || ||| | ||||| ||||| ||| | || | Sbjct 5633 ATTAGAAGATGGAAGAACATTATCAGACTACAACATTCAAAAGGAATCTACATTACACTT 5574 Query 178127 TGTTTTGAGACTCAGA 178142 || || ||||| ||| Sbjct 5573 AGTGTTAAGACTAAGA 5558 >seq5 Length=2479031 Score = 120 bits (132), Expect = 7e-22 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| ||||||| || ||||| | || |||||||| || ||||| || || || Sbjct 2307827 AAAATGC---AAATTTTTGTTAAAACATTAACTGGAAAAACAATTACCCTTGATGTTGAG 2307771 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || ||||| || || ||| ||||| || ||||||||||| || || Sbjct 2307770 CCATCTGATACGATTGAGAATGTGAAGGCAAAAATTCAAGATAAAGAAGGAATTCCACCT 2307711 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || ||| || | || || || |||||||| | ||||||||||| || | | ||| Sbjct 2307710 GATCAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGAACATTATCAGAT 2307651 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 ||||| | ||||| ||||| ||| | || |||| Sbjct 2307650 TATAATATTCAAAAGGAATCTACATTACA-CTTG 2307618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203718352802602