Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 4e-12 seq14 86.0 1e-11 >seq1 Length=977776 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 308324 TAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCAGGGGTTCGAGCCCC 308379 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||| | ||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 310317 TGCCTCTTTAGCTCAGTTGGTAGAGCGCCAGACTTTTAATCTGGTGGTCAGGGGTTCGAG 310258 Query 165769 CCCC 165772 ||| Sbjct 310257 TCCC 310254 >seq14 Length=3327155 Score = 86.0 bits (94), Expect = 1e-11 Identities = 242/364 (66%), Gaps = 6/364 (2%) Strand=Plus/Minus Query 61084 TTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAA-GAAATTCCTCAAACAGAA 61142 ||| | | ||||||||||||||| | | ||||||| | || | || | |||| ||| Sbjct 1189603 TTTATAACGCATCAACATCTGAATTATTTGGAAAAATAAAAAGTAACATC-CAAAATGAA 1189545 Query 61143 AGGACTCCGTTTTATCCTCGTAGC-CCGTATGGTGTTGCAAAACTATACGCTTACTGGAT 61201 || || ||| | ||| || | || |||| |||||||| | || || | | || Sbjct 1189544 TACACCCCATTTAACCCT-GTGTCTCCATATGCAATTGCAAAATTGTATGCACATTACAT 1189486 Query 61202 TTGTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGT-TTCAATC 61260 || |||||| | || || ||| ||||| | ||| | | || | | || |||| Sbjct 1189485 AACTATAAATTATAGAGACTCATATAATATGTTC-TGTGTCAATGGAATATTATTTAATC 1189427 Query 61261 ACGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAA 61320 | || ||||| | ||||| | ||||| ||| |||||||| || | | |||| Sbjct 1189426 ATGAAAGTCCGAGAAGAGGAGAAACTTTTGTAACTAAGAAAATTACAAAAGGAATAGCAA 1189367 Query 61321 ATATTTTTAACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATT 61380 | || | ||| || | |||| ||||| |||| || || ||| || ||||||| Sbjct 1189366 AAATATGTAAAGGCATACAAAAGTGCATAACATTAGGTAATATTGACACTTGGAGAGATT 1189307 Query 61381 GGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCCAG 61440 |||| |||| |||||||| | | || |||| || ||||| |||||| || | ||| Sbjct 1189306 GGGGGCATGCAAAAGATTATGTATATGCAATGTATTTAATGTTACAACAACATGATGCAG 1189247 Query 61441 ATGA 61444 |||| Sbjct 1189246 ATGA 1189243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057813929846090