Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq5 188 5e-43 >seq5 Length=1204002 Score = 188 bits (208), Expect = 5e-43 Identities = 312/449 (69%), Gaps = 6/449 (1%) Strand=Plus/Minus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 ||||||| ||| | | | || || |||| | |||| | |||| || || |||||| Sbjct 866329 TGAGCATTTCCCAAAATGTGTATGAACTGTGCAGGTTGCAAATTACATACCTGTGCAATC 866270 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 || || |||| ||||| ||||||||||| || |||||||| |||| |||| Sbjct 866269 ATATGTGTGAAAATGGAATAAGAGGCAATGTTAAAGGGAACTCCTAAACCCAAATCACAG 866210 Query 101828 GATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACA 101887 ||||||||||||| ||| || | || |||||| | ||||||||||| | ||| | | Sbjct 866209 GATCTTTGATACATAATACATGATAATTTACCATCAAAAACATAAAATTGGCATAAAATA 866150 Query 101888 TGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATC 101947 |||||||| || || |||||||| | ||| |||||||| ||||||| | || Sbjct 866149 TGACAAGGTGGTAATGCCATTTTATCTAAATCTTTTACATTCCATGCACACAAAATAATT 866090 Query 101948 CTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCT 102007 || ||| || || | | ||||| |||||||| | ||||||||| ||||||||| Sbjct 866089 CTCCTACTAGTTGGTTCATTCTTTATTAAATCAATCACATTTTTTAATTGATCAACTCCT 866030 Query 102008 TCTCCTTTATA---ATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGA 102064 | ||||||| ||| || | | | ||||||| || || || || ||||||||| Sbjct 866029 TTGTCTTTATAATTATCATGC---ATATTTGTATATTCAGCACCAAAGTGTCTCCACTGA 865973 Query 102065 AATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAA 102124 || ||||| | ||| || | ||| | | ||||| ||| | || ||||| ||| Sbjct 865972 AAACCATAAATAGGCCCTAAATCATTTACTTCTCTATCAAATAATTTTCTATTATCCAAA 865913 Query 102125 AATGATCTAGATCCATTCGCATCCCAAAT 102153 ||| || | |||||| || ||||| || Sbjct 865912 AATTCCCTCGTTCCATTTGCTTCCCATAT 865884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361247928757493