Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq13 298 7e-76 >seq13 Length=2538962 Score = 298 bits (330), Expect = 7e-76 Identities = 989/1519 (65%), Gaps = 49/1519 (3%) Strand=Plus/Minus Query 53132 AGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTA 53191 || ||||| ||||||||||| |||||||||| || || | | ||| || ||| Sbjct 815676 AGCAGATGTGGATTAACTACGAAAAATTCTCCACTCAGAACACGTCTGTAGTAGATGTTA 815617 Query 53192 CTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 53251 || ||||| ||||| | || ||||||||||||| |||||| | ||| |||||||| ||| Sbjct 815616 CTAGTATATGGTTCAAAGGATTCATTATTTCCCAGAATTTGCGAAGTAGATGCAGTTGGC 815557 Query 53252 ATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGT 53311 || || |||| | ||| ||| || | || | | | | |||||| ||||| Sbjct 815556 ATTGGAGCCAGAAGTAATGAATTCCTCAATCCATGTTTCTTTATTTTAGTCTTTAGTTCA 815497 Query 53312 TCCCAATTCCAAAG------ATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATA 53365 |||||||||||| ||| | |||| ||||| ||| Sbjct 815496 TCCCAATTCCAATATTTATTATCAACCTTTACA---TTCCACATGTCAAATTGTAAAATT 815440 Query 53366 CCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTC 53424 || | ||| || | || | ||| |||||| || || ||||| | | | ||| | ||| Sbjct 815439 CCTTGACTAGCTGGACTACCCTG-ATATGTTTCATAAGGTCCATACACTTGAGCCAATTC 815381 Query 53425 ACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTG 53484 | | || || ||| | ||||| || ||||| || || | ||||||| |||| Sbjct 815380 CATAGACATTTCCAAAGCAGCATAATACATAGTTTCAAAAATTCTTTTATTTAATTCTTT 815321 Query 53485 TGCTTCCAGGCTA--TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGA 53542 || | || ||| | ||||| |||| | ||||| | || || ||||||||| Sbjct 815320 AGCAG--AATCTGATTCATAGGGATATCTTAATAACATAAAAGTATCAGCCAATCCTTGA 815263 Query 53543 ACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAA 53602 || || || || || ||||||||||| |||| || || ||||||| || || ||| Sbjct 815262 ACCCCTATTCCTATTGGTCTATGTCTTGTATTGGATCTTCTAGCTTCTTCAACTGGGTAA 815203 Query 53603 TAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGT 53662 ||||| | ||||||||||||| | |||| ||| | ||| | | | ||| Sbjct 815202 TAATTTCTTTCTATAATTTTATCCAAATTTCGTGTAATAATTTTTGTAATTTGGTAAAGT 815143 Query 53663 TTGAGAAAATCAAATTGT-----CCATCTAT-TACAAACATGTTCAATGCAATAGATGCC 53716 || ||||| ||||| | | | ||| |||||| || ||||| ||||||||| Sbjct 815142 TTCTTAAAATTAAATTCTTTTTTCTCTGTATCTACAAATTTGCATAATGCTATAGATGCC 815083 Query 53717 AGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTA 53776 |||||||| || || || |||| || | | |||| || |||||| || | ||| Sbjct 815082 AGATTACATACAGCAACTTCATCAGGAGATGTGTATTCAATAATCTCACAACATAAGTTA 815023 Query 53777 CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAA 53836 ||||| || || ||||||||||||| ||||| || ||||||| ||| |||||| Sbjct 815022 CTACATTTTATAGTTCCTAAATTTTTCTGATTCGATTTAGAATTACACGAATCTTTATAA 814963 Query 53837 AGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGA 53896 || ||| | || ||| ||||| |||||| ||| |||| | || || | | | Sbjct 814962 AGCATGTAAGGGACACCTGTTTCTATCTGGC--TCTGTAATA---TAGCAAACCATAA-A 814909 Query 53897 GCCTTTATTATAGA---TTTGTATCTC----TTTTCTCTTTCGTATAGTGTATACAATCG 53949 | | | || ||| ||| | || | |||||| || ||| |||||| || Sbjct 814908 TCTTGTGCTA-AGACTGTTTTTTTCCCCATGTTTTCTTCCTCATATTTTGTATATAACTT 814850 Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 |||||| || || ||||| | | || || ||||| |||| |||||||| || | Sbjct 814849 TTCAAATTCTTCACCCCATGTTTCGCTTAACCCTGGACACTCATTTGGACACATTAAAGT 814790 Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 54068 ||| | | | || || |||| ||||||||| ||||| |||| ||| | ||| ||| | Sbjct 814789 CCAATTTTTATTTTCTTTAACTCTTTTCATAAAAAGATCTGGAACCCACACAGC-ATAGA 814731 Query 54069 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 54128 | ||||||| | ||| ||| || ||||| ||| ||| | | ||| | || | | Sbjct 814730 AAAGATCTCGAGCTCTTAATTCTTCTTTTCCATGATTTTTTCTTAAATCTAAAAATTCAA 814671 Query 54129 TAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTC 54188 ||| ||||||||||| ||||| | ||||| | | | ||| | ||| ||||| Sbjct 814670 AAATGTCAGAATGCCATGGTTCAATGTATACAGCAAAAGATCCTTTTCTTTTCCCTCCTC 814611 Query 54189 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCATTG 54247 | ||||||| |||||||| || | ||| | ||||| | ||| || | |||| || ||| Sbjct 814610 CTTGATCTACATATCTAGCAGTATCATTGAATACTCTTAGCATAGGTACTAAT-CCGTTG 814552 Query 54248 GATGCACCATTGGTCCCGGAGATAT---AGCTTCCACTGGCACGAATATTACTAATTGAT 54304 ||| ||||| || || |||| | || || | | |||| | || Sbjct 814551 GATATTCCATTCGTTCCTCTAATATATGAATTTTGAC---CTCTTATATCTTGCACTGCA 814495 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | || || || || || |||| |||||||| ||| |||| || || || | || Sbjct 814494 ACTCCAATACCACCAGCTGTTTTGCTAATTAATGCACATTGTTTCAATGTTTCGAAAATT 814435 Query 54365 CCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 54423 || ||||| ||| ||| || ||| || |||||| ||||||||| | | Sbjct 814434 CCTTCTATCGAATCTGATTTCATTGATAA-TAAAAAACACGAAGACATTTGTGGTCTTGG 814376 Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 |||||| | ||| ||||| ||||||| || || || || |||| | || | || | Sbjct 814375 AGTTCCAGAATTGAATAATGTAGGAGTTGCATGTGTGAAATATTTCTGTGACATTAAGTG 814316 Query 54484 GTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTA 54542 || || || | ||| || | ||| || | ||| ||||| | | || | ||||| Sbjct 814315 ATATGTTTCAAGTGCTTTTTCCAAATCGTCAAT-ATGGATTCCAATAGATACTCTCATTA 814257 Query 54543 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCA 54602 ||| || || |||||||||| || || || || || || || || ||| | Sbjct 814256 ACAAATGTTGTGGTCTTTCAATAATTTTCCCATTAATGCGTAGTAAATATGACCGTTCTA 814197 Query 54603 AAGTTTTAAAACCAAAATA 54621 | || ||||||||||| || Sbjct 814196 ATGTCTTAAAACCAAAGTA 814178 Score = 190 bits (210), Expect = 2e-43 Identities = 374/546 (68%), Gaps = 8/546 (1%) Strand=Plus/Minus Query 24141 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 24200 ||||| |||||| || || |||| |||||| ||||| || || || | ||| | Sbjct 2310272 AAATCTGTGTGTAGTCCTTCATCTCGACTAATCAATTCATTACTGAATGTCAATCCATGT 2310213 Query 24201 A--TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATT 24257 | ||| ||||||||| ||||||||| | | || || |||| ||| |||||| Sbjct 2310212 AACTTATTTT--GCTTTTTAAACCAAAATATTG-CACAGAAACTTCCACTAAATAAAATT 2310156 Query 24258 CCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCAC 24317 |||||||| ||| || | | |||||| || | | |||| |||||| Sbjct 2310155 CCTTCTACGCATGCATTTGCCACTATCCTTTCTGCAAAGGAATTAGTATCATTTATCCAT 2310096 Query 24318 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 24377 || ||||| || || ||||||||| || || | |||||||||| ||| | | Sbjct 2310095 TTGGCTGCCCATAATGCTTTATTTTTTACAGCTGGTATATTTTCTATAGCATGAAATAAA 2310036 Query 24378 TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 24437 | | |||| || ||| || | || ||||||| || | ||| || |||| ||| Sbjct 2310035 TTCAATCTTTCTTTTTCATCCTTTATGTAATTATCAATTAATAAACTGTATGTTTCGGAA 2309976 Query 24438 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 24497 || || ||||||| || |||||||| || || | | ||||| ||||| || ||| Sbjct 2309975 TGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCCTCTGTAATTTGAACT 2309916 Query 24498 TCTATACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 24556 | | |||| | | || ||||||||||| || ||||| ||||| ||||||||||| Sbjct 2309915 TGTCGTAAAAA-CTTACTAGCTAAATTTTCCAAAACAATTCCATCACTTGCTGCAAAAAA 2309857 Query 24557 CGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGAT 24616 || || |||||||||||||||| ||||| | ||| ||| | |||| || | Sbjct 2309856 TGCTAAAACATGTTTTATAAAATGCTTTTCATTATCATTTAATTTTTCGAAATCTTTTAA 2309797 Query 24617 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 24676 ||| | |||| ||| | ||| ||| |||||||||||||||| ||||| |||||||| | Sbjct 2309796 ATCACTCGATAAATCTATTTCCTCCGCTGTCCAAAATGATGCTTCTGCTTTTTTATAAAA 2309737 Query 24677 ATTCCA 24682 || ||| Sbjct 2309736 ATCCCA 2309731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593716085810640