Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq5 230 4e-55 seq13 188 1e-42 seq11 152 8e-32 >seq5 Length=1204002 Score = 230 bits (254), Expect = 4e-55 Identities = 454/669 (68%), Gaps = 17/669 (3%) Strand=Plus/Minus Query 205321 TTTATTTTTAATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTA 205380 |||| ||| | | |||| ||||| | ||| | | | ||||||| ||||||| | | Sbjct 866407 TTTAATTTAAGTGTTGGGAATGGATACGGTATTCTGTTTAATTGTGTTTTTAAGCTGTCT 866348 Query 205381 ATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAA 205440 | || ||| ||| | ||| ||||| || | | | || || || | |||| ||| Sbjct 866347 ACGTGGTTATTATACACATGAGCATTTCCCAAAATGTGTATGAACTGTGCAGGTTGCAAA 866288 Query 205441 TTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACA 205500 ||| || ||||||||||||| || || | |||| |||| ||||| || || Sbjct 866287 TTACATACCTGTGCAATCATATGTGTGAAAATGGAATAAGAGGCAATGTTAAAGGGAACT 866228 Query 205501 CCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATT 205560 |||||||||| |||| |||||||||||||| ||||| | ||||| || || Sbjct 866227 CCTAAACCCAAATCACAGGATCTTTGATACATAATACATGATA---ATTTACCATCAAAA 866171 Query 205561 ACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGA 205620 |||| |||||| ||| |||||||||||||| |||| || || | |||| | | Sbjct 866170 ACATAAAATTGGCATAAAATATGACAAGGTGGTAATGCCATTTTATCTAAATCTTTTACA 866111 Query 205621 TTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATA 205680 ||||| || || || || | ||| |||| ||| |||||| || || | | Sbjct 866110 TTCCATGCACACAAAATAATTCTCCTACTAGTTGGTTCATTCTTTATTAAATCAATCACA 866051 Query 205681 TGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCA 205740 | | |||||||||||| ||||| | | ||||||| || ||||| |||||| |||| Sbjct 866050 TTTTTTAATTGATCAACTCCTTTGTCTTTATAATTATCATGCATATTTGTATATTCAGCA 865991 Query 205741 CCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTA 205800 ||||| || | ||| ||||||||||||| || ||||||||| | ||| ||||||| Sbjct 865990 CCAAAGTGTCTCCACTGAAAACCATAAATAGGCCCTAAATCATTTACTTCTCTATCA--- 865934 Query 205801 AAACCACGtttttttat----atattttaatgatccattttcatcccaaatatggattcc 205856 || | || | |||| | ||| | ||||||| | ||||| || || | Sbjct 865933 -AATAATTTTCTATTATCCAAAAATTCCCTCGTTCCATTTGCTTCCCATATTC---TTAC 865878 Query 205857 tttattttttaGAA---TATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTC 205913 || || |||| || ||||| ||| ||| ||| || ||||||||||||||||| Sbjct 865877 GTTTTTATTTAAAAGTGTATTTCCATTTGTTTCTCCTCGAATGAACCATAATAATTCTTC 865818 Query 205914 AACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAATCATCTAATTT 205973 || |||||||| ||| | | |||||||| | ||| ||||| | || | ||| || Sbjct 865817 AATTATTCCTCTTAGAAATAATTTCTTTGTTGTCAGTAAGGGAAAATATTCGTTTAAATT 865758 Query 205974 ATATTTCAT 205982 ||||||| Sbjct 865757 GAATTTCAT 865749 >seq13 Length=2538962 Score = 188 bits (208), Expect = 1e-42 Identities = 182/234 (78%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| ||||||| ||||||| ||||| || || |||| |||| || Sbjct 758952 ATGCAAATTTTTGTAAAGACTTTAACAGGAAAAACCATCACACTAGACGTTGAGTCATCA 759011 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| || | || ||||| |||||||||||||| || |||||||| || Sbjct 759012 GACACAATTGAAAACGTCAAGGCTAAAATACAAGATAAAGAAGGAATTCCACCTGACCAG 759071 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || |||||||||||||||||||| ||| | |||||||| |||||||||| Sbjct 759072 CAAAGATTAATATTTGCAGGAAAACAATTAGAAGATGGAAGAACATTATCAGATTATAAT 759131 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772 || ||||| ||||| ||||| ||||| ||| | |||||| |||||||| || || Sbjct 759132 ATCCAAAAGGAATCTACTTTACATTTAGTTCTCCGTTTAAGAGGTGGTTTTTAA 759185 Score = 168 bits (186), Expect = 1e-36 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 124564 CAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGA 124623 |||| ||||| || || | || |||| || ||||||||| || | || | Sbjct 758749 CAGGAAAAACCATCACACTGGACGTTGAGTCATCAGATACAATTGAAAACGTCAAGGCTA 758808 Query 124624 AAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAAC 124683 |||| |||||||||||||| || |||||||| || ||||| | || ||||||||||||| Sbjct 758809 AAATACAAGATAAAGAAGGAATTCCACCTGACCAGCAAAGATTAATATTTGCAGGAAAAC 758868 Query 124684 AATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATT 124743 ||||||| ||| | |||||||| |||||||||||| ||||| ||||||||||| |||| Sbjct 758869 AATTAGAAGATGGAAGAACATTATCAGATTATAATATCCAAAAGGAATCAACTTTACATT 758928 Query 124744 TGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 | ||| | |||||| |||||||||| ||| || Sbjct 758929 TAGTTCTCCGTTTAAGAGGTGGTATGCAAATTT 758961 >seq11 Length=2227116 Score = 152 bits (168), Expect = 8e-32 Identities = 162/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||||||||| |||| ||| |||| || ||||| || || | || | || || Sbjct 206464 AATGCAAATATTCGTAAAAACATTAACCGGAAAAACCATCACCCTTGATGTCGAGTCATC 206523 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||| ||| ||| |||| || |||||||||||||| ||||| || ||||| |||| Sbjct 206524 TGATACGATTGAGAATGTTAAGGCA-AAAATTCAAGATAAGGAAGGAATTCCACCCGATC 206582 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 |||| || | || ||||||||||||||| |||| ||| | ||||||||| || |||| Sbjct 206583 AACAGAGATTAATATTTGCAGGAAAACAACTAGAAGATGGCAGAACATTAGCTGACTATA 206642 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 | ||||| || || || ||||| |||||||| Sbjct 206643 ACATTCAGAAGGAGTCCACTTTACATTTGGT 206673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755448983702400