Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq11 89.7 6e-13 seq14 82.4 9e-11 >seq11 Length=2227116 Score = 89.7 bits (98), Expect = 6e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| || ||| |||||| ||||| || || ||||| | || | | || ||| Sbjct 206673 ACCAAATGTAAAGTGGACTCCTTCTGAATGTTATAGTCAGCTAATGTTCTGCCATCTTCT 206614 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || || || || || ||||| | || ||| || |||| || | | ||||| || || Sbjct 206613 AGTTGTTTTCCTGCAAATATTAATCTCTGTTGATCGGGTGGAATTCCTTCCTTATCT-TG 206555 Query 43095 ATTTTTTGTTTGAGCGT-CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | |||||| | | | | | | | ||| || || || ||||| | ||||||||||| Sbjct 206554 AATTTTTGCCTTAACATTCTCAATCGTATCAGATGACTCGACATCAAGGGTGATGGTTTT 206495 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || |||| || ||||| || ||||||||||| Sbjct 206494 TCCGGTTAATGTTTTTACGAATATTTGCATTTT 206462 >seq14 Length=3327155 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 |||||| |||||| ||||| |||||||||||||||| ||||| ||||||||||| | | Sbjct 1097749 GGGAATTGAACCCGGGTCTTCCGCGTGACAGGCGGAAATACTTGCCACTATACTATCTCG 1097690 Query 60136 GATTGAATAT 60145 |||| ||||| Sbjct 1097689 GATTCAATAT 1097680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571812289244040