Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq13 163 3e-35 >seq13 Length=2538962 Score = 163 bits (180), Expect = 3e-35 Identities = 573/880 (65%), Gaps = 25/880 (3%) Strand=Plus/Minus Query 15908 AACACATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTT 15967 || || | ||| ||| | | || ||| ||| | ||| ||||| || ||||| |||| Sbjct 2310605 AAGACCTGATCCTTTCTCTGTGCCATGACTCCCGATTTCTGATAATCTGCAACTCGCTTT 2310546 Query 15968 TCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTT 16027 ||||| |||||||||||||||| || || || ||||| | | || ||||| ||| Sbjct 2310545 TCAAAAAAATTTGTTTTTCCTTGTAGGGATATGAGATCCATCCAGTTGAATGGATTCTTT 2310486 Query 16028 GAACAATAGTATTTATCGCATCCCAA---TTCCAACAATAATCTATCCGCCACAAATTCT 16084 ||| | ||| | ||||| ||||| ||||| ||| || |||||||| Sbjct 2310485 GAATGGAAAATTTTGGAAGACCCCAAACATTCCAG---TAATCGATCAGCGACAAATTCG 2310429 Query 16085 ATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTT 16144 |||||||| |||||| | | ||||| || ||||| | | ||| | | ||| | Sbjct 2310428 ATATACTGAGACATTAATCTAGAATTCATCCCAATTAAATCACAAGGCAAAGATTCGCAT 2310369 Query 16145 AAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTT-ACTACA-CTATT-- 16200 | ||| | |||||| | || || || | | |||| ||| || || || | Sbjct 2310368 ATAAATGATCTTTCTACTTCTACTGCCTCTTTAACGATAT-TCTGCACAACTTCTTCTGG 2310310 Query 16201 TAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTC 16260 ||| | | |||||| || | |||| ||| |||||| || | |||||| Sbjct 2310309 TAATTTATTTTCTAATAAAC---TATAAATTAAACAGTTAAAATCTGTGTGTAGTCCTTC 2310253 Query 16261 GTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCA--TTAGTCCTCGTTTTTTA 16318 || | ||| || || || || ||||| | || | | ||| | | | |||||| Sbjct 2310252 ATCTCGACTAATCAATTCATTACTGAATGTCAATCCATGTAACTTATT--TTGCTTTTTA 2310195 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||||||||| || || ||| ||| || || ||||| || ||| ||| Sbjct 2310194 AACCAAAATATTGCACAGAAACTTCCACTAAATAAAATTCCTTCTACGCATGCATTTGCC 2310135 Query 16379 ACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaatttgct 16438 || | | || | | | || | | | || |||||||| ||||| |||| Sbjct 2310134 ACTATCCTTTCTGCAAAGGAATTAGTATCATTT---ATCCATTTGGCTGCCCATAATGCT 2310078 Query 16439 ttttgtttAACA-CAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCT 16497 || | ||| ||| | | | || || ||||| |||| |||||||| | ||||||| Sbjct 2310077 TTATTTTTTACAGCTGGT-ATATTTTCTATAGCATGAAATAAATTCAATCTTTCTTTTTC 2310019 Query 16498 ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGC 16557 ||| || ||| |||| |||| |||||| || |||| ||||| ||||| || | || Sbjct 2310018 ATCCTTTATGTAATTATCAATTAATAAACTGTATGTTTCGGAATGTATATTTTCAACAGC 2309959 Query 16558 TATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTC 16617 ||| |||||| |||||| | | || || | ||||| |||| |||||| ||| | Sbjct 2309958 TATTTGAAAAGAATAAAATTTTTTTGCCTCTGTAATTTGAACTTGTC-GTAAAAACTTAC 2309900 Query 16618 T-GCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAA 16676 | ||||| ||||| ||| |||||||| || ||||||||||| || | | ||||| | Sbjct 2309899 TAGCTAAATTTTCCAAAACAATTCCATCACTTGCTGCAAAAAATGCTAAAACATGTTTTA 2309840 Query 16677 TAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGA 16736 |||||| ||||| ||||| | |||| | || ||||| | |||||||| | Sbjct 2309839 TAAAATGCTTTTCATTATCATTTAATTTTTCGAAATCTTTTAAATCACTCGATAAATCTA 2309780 Query 16737 CCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATA 16776 || || | |||||||| || || | || |||||||| Sbjct 2309779 TTTCCTCCGCTGTCCAAAATGATGCTTCTGCTTTTTTATA 2309740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462507704419800