Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq5 192 5e-44 >seq5 Length=1204002 Score = 192 bits (212), Expect = 5e-44 Identities = 354/514 (69%), Gaps = 10/514 (2%) Strand=Plus/Plus Query 20044 TTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGG 20103 ||||||||| | || || || ||||| | ||| | ||||||| ||||||||| Sbjct 865773 TTTCCCTTACTGACAACAAAGAAATTATTTCTAAGAGGAATAATTGAAGAATTATTATGG 865832 Query 20104 TTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGC 20163 || ||| |||| ||||||| | ||| || | ||| || | || ||| Sbjct 865833 TTCATTCGAGGAGAAACAAATGGAAATACACTTTTAAATAAAAACGTAAGAATATGGGAA 865892 Query 20164 GCACATGGATCTAAGCAATTTTTACACA---GCAATGGATTTGACAACCGTCAAGAGGGG 20220 ||| ||||| | | | ||||||| | | | || |||||| | | ||| Sbjct 865893 GCAAATGGAACGAGGGAATTTTTGGATAATAGAAAATTATTTGATA---GAGAAGTAAAT 865949 Query 20221 GATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATG 20280 ||||| || ||| | ||||| ||||| |||||||| ||||| ||||||||| | ||| Sbjct 865950 GATTTAGGGCCTATTTATGGTTTTCAGTGGAGACACTTTGGTGCTGAATATACAAATATG 866009 Query 20281 AACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAA- 20339 | |||||| | ||||||| ||||||||| ||||||| ||| ||||||| || Sbjct 866010 CATGATAATTATAAAGACAAAGGAGTTGATCAATTAAAAAATGTGATTGATTTAATAAAG 866069 Query 20340 AACGAACCCAAACGAC-AGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTT 20398 || ||||| ||| | || ||||||||||| || || ||||| | |||||| | | Sbjct 866070 AATGAACC--AACTAGTAGGAGAATTATTTTGTGTGCATGGAATGTAAAAGATTTAGATA 866127 Query 20399 TAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGT 20458 |||||| || || || |||||||| ||||||||||||| ||| | || | |||| | Sbjct 866128 AAATGGCATTACCACCTTGTCATATTTTATGCCAATTTTATGTTTTTGATGGTAAATTAT 866187 Query 20459 CGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAA 20518 | ||| ||||||||| ||||| |||| |||| | || ||||| || || ||||| Sbjct 866188 CATGTATTATGTATCAAAGATCCTGTGATTTGGGTTTAGGAGTTCCCTTTAACATTGCCT 866247 Query 20519 GTTATGCGCTGCTTACGTATATGATTGCACATGT 20552 |||| | | | || ||||||||||||| || Sbjct 866248 CTTATTCCATTTTCACACATATGATTGCACAGGT 866281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399180385264135