Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq13 107 2e-18 >seq13 Length=2538962 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| ||||||||| | ||||| ||||| ||||| | |||||||| | || Sbjct 758952 ATGCAAATTTTTGTAAAGACTTTAACAGGAAAAACCATCACACTAGACGTTGAGTCATCA 759011 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| ||||| | |||| || || ||||| | || || |||||| Sbjct 759012 GACACAATTGAAAACGTCAAGGCTAAAATACAAGATAAAGAAGGAATTCCACCTGACCAG 759071 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 || | ||||||| || || ||||| || ||||| | | || || | | |||||||| Sbjct 759072 CAAAGATTAATATTTGCAGGAAAACAATTAGAAGA-TGGAAGAACATTATCAGATTATAA 759130 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| ||||| ||| | ||| | || || Sbjct 759131 TATCCAAAAGGAATCTACTTTACATTTAGTTCT 759163 Score = 104 bits (114), Expect = 2e-17 Identities = 355/550 (65%), Gaps = 10/550 (2%) Strand=Plus/Minus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 || || || || ||||| ||||| || || || || || ||||| || | ||| || Sbjct 815094 GCTATAGATGCCAGATTACATACAGCAACTTCATCAGGAGATGTGTATTCAATAATCTCA 815035 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 ||||| || ||||| ||||| || || ||||| |||| || ||| ||| ||| Sbjct 815034 CAACATAAGTTACTACATTTTATAGTTCCTAAATTTTTCTGATTCGATTTAGAATTACAC 814975 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 ||||| || || |||||||| || || || || | ||| || | || || | Sbjct 814974 GAATCTTTATAAAGCATGTAAGGGACACCTGTTTCTATCTGGCTCTGTAATATAGCAAAC 814915 Query 23201 CACATAGTCTGAGCGTGAACACGTCGCACGTACC--TGCCTTCTTCCTCGTACTTTTGGT 23258 || | | || || || || | || || ||||||||| || ||| | Sbjct 814914 CATAAATCTTGTGCT--AAGACTGTTTTTTTCCCCATGTTTTCTTCCTCATATTTTGTAT 814857 Query 23259 ACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACA 23318 | ||| |||||||| |||| | ||| | || || | | | ||||||| Sbjct 814856 ATAACTTTTCAAATTCTTCACCCCATGTTTCGCTTAACCCTGGACACTCATTTGGACACA 814797 Query 23319 TGAGACTCCACATTGAGTCATTTTC---AACGCGTCTCATAAAAAGATCCGGTATCCATA 23375 | | | |||| || | |||||| ||| | | ||||||||||||| || | ||| | Sbjct 814796 TTAAAGTCCAATTT---TTATTTTCTTTAACTCTTTTCATAAAAAGATCTGGAACCCACA 814740 Query 23376 GAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCA 23435 ||| ||||| || || || || | | || ||||| || || ||| | ||||| | Sbjct 814739 CAGCATAGAAAAGATCTCGAGCTCTTAATTCTTCTTTTCCATGATTTTTTCTTAAATCTA 814680 Query 23436 AAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 |||| || || | ||| | |||||| || || | ||| || ||||| | || ||| | Sbjct 814679 AAAATTCAAAAATGTCAGAATGCCATGGTTCAATGTATACAGCAAAAGATCCTTTTCTTT 814620 Query 23496 TATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGA 23555 | || || ||||| || || | || || | ||| | ||||||||||| || || | Sbjct 814619 TCCCTCCTCCTTGATCTACATATCTAGCAGTATCATTGAATACTCTTAGCATAGGTACTA 814560 Query 23556 GACCGTTGGA 23565 |||||||| Sbjct 814559 ATCCGTTGGA 814550 Score = 89.7 bits (98), Expect = 5e-13 Identities = 181/266 (68%), Gaps = 2/266 (1%) Strand=Plus/Plus Query 57561 TATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAA 57620 |||||||| | ||| | | || ||||| ||||||||||| |||||||| | || ||| Sbjct 2309719 TATCCAGATGTGTGGGATTTTTATAAAAAAGCAGAAGCATCATTTTGGACAGCGGAGGAA 2309778 Query 57621 GTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTT 57680 |||| | || | ||| | | |||| || | || || ||| | ||||| Sbjct 2309779 ATAGATTTATCGAGTGATTTAAAAGATTTCGAAAAATTAAATGATAATGAAAAGCATTTT 2309838 Query 57681 ATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTT-GGT 57739 || ||||| || || || ||||| || ||| ||||| |||||| || ||||| | | Sbjct 2309839 ATAAAACATGTTTTAGCATTTTTTGCAGCAAGTGATGGAATTGTTTTGGAAAATTTAGCT 2309898 Query 57740 CGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGT 57799 | ||| |||| || | |||| ||| | || ||||| | | ||||| |||||| | Sbjct 2309899 AGTAAG-TTTTTACGACAAGTTCAAATTACAGAGGCAAAAAAATTTTATTCTTTTCAAAT 2309957 Query 57800 GGCCATTGAAAACGTGCATTCAGAAA 57825 || ||||||| | ||||| |||| Sbjct 2309958 AGCTGTTGAAAATATACATTCCGAAA 2309983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762259944560