Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq13 315 9e-81 >seq13 Length=2538962 Score = 315 bits (348), Expect = 9e-81 Identities = 990/1514 (65%), Gaps = 39/1514 (3%) Strand=Plus/Minus Query 62370 AGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTA 62429 || ||||| || |||||||| ||||||||| || || | | ||| || ||| Sbjct 815676 AGCAGATGTGGATTAACTACGAAAAATTCTCCACTCAGAACACGTCTGTAGTAGATGTTA 815617 Query 62430 CTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 62489 || ||||| ||||| | || ||||||||||||| |||||| | ||| |||||||| ||| Sbjct 815616 CTAGTATATGGTTCAAAGGATTCATTATTTCCCAGAATTTGCGAAGTAGATGCAGTTGGC 815557 Query 62490 ATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGT 62549 || || |||| | ||| ||| || | || | | | | |||||| ||||| | Sbjct 815556 ATTGGAGCCAGAAGTAATGAATTCCTCAATCCATGTTTCTTTATTTTAGTCTTTAGTTCA 815497 Query 62550 TCCCAATTCCAAAGATC-----CGACGGTACAACANNNNNNNNNNNATATTGTAGAATAC 62604 |||||||||||| | | || | ||| | |||||| ||| | Sbjct 815496 TCCCAATTCCAATATTTATTATCAACCTTT--ACATTCCACATGTCAAATTGTAAAATTC 815439 Query 62605 CGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTA 62663 | | ||| || | || | ||| |||||| ||||| ||||| | | | ||| | || Sbjct 815438 CTTGACTAGCTGGACTACCCTG-ATATGTTTCATAAGGTCCATACACTTGAGCCAATTCC 815380 Query 62664 CAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGT 62723 | | || || ||| | ||||| || |||||||| || | ||||||| |||| Sbjct 815379 ATAGACATTTCCAAAGCAGCATAATACATAGTTTCAAAAATTCTTTTATTTAATTCTTTA 815320 Query 62724 GCT---TCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGA 62780 || || | ||| | ||||| |||| | ||||| | || || ||||||||| Sbjct 815319 GCAGAATCTGAT---TCATAGGGATATCTTAATAACATAAAAGTATCAGCCAATCCTTGA 815263 Query 62781 ACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAA 62840 || || || || || ||||||||||| |||| || || ||||||| || || ||| Sbjct 815262 ACCCCTATTCCTATTGGTCTATGTCTTGTATTGGATCTTCTAGCTTCTTCAACTGGGTAA 815203 Query 62841 TAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGT 62900 ||||| | ||||||||||||| | ||||| ||| | ||| | | | ||| Sbjct 815202 TAATTTCTTTCTATAATTTTATCCAAATTTCGTGTAATAATTTTTGTAATTTGGTAAAGT 815143 Query 62901 TTGAGAAAATCAAATCGC-----CCATCTAT-TACAAACATGTTCAATGCAACAGATGCC 62954 || ||||| |||| | | ||| |||||| || ||||| | ||||||| Sbjct 815142 TTCTTAAAATTAAATTCTTTTTTCTCTGTATCTACAAATTTGCATAATGCTATAGATGCC 815083 Query 62955 AGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTA 63014 |||||||| || || || |||| || | | |||| || |||||| || | ||| Sbjct 815082 AGATTACATACAGCAACTTCATCAGGAGATGTGTATTCAATAATCTCACAACATAAGTTA 815023 Query 63015 CTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAA 63074 ||||| || |||||||||||||||| ||||| || ||||||| ||| |||||| Sbjct 815022 CTACATTTTATAGTTCCTAAATTTTTCTGATTCGATTTAGAATTACACGAATCTTTATAA 814963 Query 63075 AGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGA 63134 || ||| | || ||| ||||| ||||| | || || || ||| | || | Sbjct 814962 AGCATGTAAGGGACACCTGTTTCTATCTGGCTCTGTAATATAGCAAACCATAAATCTTGT 814903 Query 63135 GCCTTTATTATAGATTTGTATCTCCT-TTCTCTT--TCGTATAGAGTATACAATCGTTCG 63191 || || | | ||| | | | | || |||| || ||| ||||| || ||| Sbjct 814902 GC---TAAGACTGTTTTTTTCCCCATGTTTTCTTCCTCATATTTTGTATATAACTTTTCA 814846 Query 63192 AACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCAC 63251 || || || ||||| | | || | ||||| |||| |||||||| || | ||| Sbjct 814845 AATTCTTCACCCCATGTTTCGCTTAACCCTGGACACTCATTTGGACACATTAAAGTCCAA 814786 Query 63252 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAG 63310 | | | || || |||| ||||||||| ||||| |||| ||| | ||| ||| || || Sbjct 814785 TTTTTATTTTCTTTAACTCTTTTCATAAAAAGATCTGGAACCCACACAGC-ATAGAAAAG 814727 Query 63311 ATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 63370 ||||| | ||| ||| || ||||| ||| ||| | | ||| | || | | ||| Sbjct 814726 ATCTCGAGCTCTTAATTCTTCTTTTCCATGATTTTTTCTTAAATCTAAAAATTCAAAAAT 814667 Query 63371 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTG 63430 ||||||||||| ||||| | ||||| || | | ||| | ||| |||||| || Sbjct 814666 GTCAGAATGCCATGGTTCAATGTATACAGCAAAAGATCCTTTTCTTTTCCCTCCTCCTTG 814607 Query 63431 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCGTTTGATA 63489 ||||| |||||||| || | ||| | ||||| | ||| || | |||| ||||| |||| Sbjct 814606 ATCTACATATCTAGCAGTATCATTGAATACTCTTAGCATAGGTACTAAT-CCGTTGGATA 814548 Query 63490 TACCATTGGTACCGGAGATATA-GCCTCCACTG-GCACGAATATTACTAATTGATAGACC 63547 | ||||| || || ||||| | | || | | |||| | || | || Sbjct 814547 TTCCATTCGTTCCTCTAATATATGAAT--TTTGACCTCTTATATCTTGCACTGCAACTCC 814490 Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTC 63607 || || || || |||| |||||||| ||| |||| || || || | || ||||| Sbjct 814489 AATACCACCAGCTGTTTTGCTAATTAATGCACATTGTTTCAATGTTTCGAAAATTCCTTC 814430 Query 63608 TATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTC 63666 ||| ||| ||| || ||| || |||||| ||||||||| | | | ||||| Sbjct 814429 TATCGAATCTGATTTCATTGATAA-TAAAAAACACGAAGACATTTGTGGTCTTGGAGTTC 814371 Query 63667 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63726 | | ||| ||||| ||||||| || || || || |||| | || | || | || | Sbjct 814370 CAGAATTGAATAATGTAGGAGTTGCATGTGTGAAATATTTCTGTGACATTAAGTGATATG 814311 Query 63727 TCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATG 63785 | |||| ||| || | ||| || | ||| ||||| | | || | |||||||| Sbjct 814310 TTTCAAGTGCTTTTTCCAAATCGTCAAT-ATGGATTCCAATAGATACTCTCATTAACAAA 814252 Query 63786 TGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63845 || || |||||||||| |||||| || || | || || || ||| || || Sbjct 814251 TGTTGTGGTCTTTCAATAATTTTCCCATTAATGCGTAGTAAATATGACCGTTCTAATGTC 814192 Query 63846 TTAAAACCAAAATA 63859 ||||||||||| || Sbjct 814191 TTAAAACCAAAGTA 814178 Score = 188 bits (208), Expect = 9e-43 Identities = 375/547 (69%), Gaps = 10/547 (2%) Strand=Plus/Minus Query 33588 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGC 33647 ||||| ||| || || || |||| |||||| ||||| ||| || || | ||| | Sbjct 2310272 AAATCTGTGTGTAGTCCTTCATCTCGACTAATCAATTCATTACTGAATGTCAATCCATGT 2310213 Query 33648 A--TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTC 33705 | ||| ||||||||| ||||||||| | | ||| ||| ||| || |||| Sbjct 2310212 AACTTATTTT--GCTTTTTAAACCAAAATATTGCACAGAAACTTCCACTAAATAAAATTC 2310155 Query 33706 CTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCAC 33764 ||||||| ||| ||| || | | || ||| || | | |||| |||||| Sbjct 2310154 CTTCTAC-GCATGCATTTGCCACTATCCTTTCTGCAAAGGAATTAGTATCATTTATCCAT 2310096 Query 33765 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33824 || ||||| || || ||||||||| || || ||||||| |||| ||| | | Sbjct 2310095 TTGGCTGCCCATAATGCTTTATTTTTTACAGCTGGTATATTTTCTATAGCATGAAATAAA 2310036 Query 33825 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33884 | | |||| || ||| || | ||| |||| || || | ||| || |||| ||| Sbjct 2310035 TTCAATCTTTCTTTTTCATCCTTTATGTAATTATCAATTAATAAACTGTATGTTTCGGAA 2309976 Query 33885 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 33944 || || ||||||| || || ||||| || || | | ||||| ||||| || ||| Sbjct 2309975 TGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCCTCTGTAATTTGAACT 2309916 Query 33945 TCT-GTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAA 34002 | | ||| ||| | | || ||||||||||| || ||||||||||| |||||||||| Sbjct 2309915 TGTCGTAAAAACT--TACTAGCTAAATTTTCCAAAACAATTCCATCACTTGCTGCAAAAA 2309858 Query 34003 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 34062 | || || |||||||||||||||| ||||| | ||| ||| | |||| || | Sbjct 2309857 ATGCTAAAACATGTTTTATAAAATGCTTTTCATTATCATTTAATTTTTCGAAATCTTTTA 2309798 Query 34063 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 34122 ||| | |||| ||| | ||| ||| |||||||||||||||| ||||| |||||||| | Sbjct 2309797 AATCACTCGATAAATCTATTTCCTCCGCTGTCCAAAATGATGCTTCTGCTTTTTTATAAA 2309738 Query 34123 TATTCCA 34129 || ||| Sbjct 2309737 AATCCCA 2309731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629811750569040