Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq13 563 8e-156 >seq13 Length=2538962 Score = 563 bits (624), Expect = 8e-156 Identities = 1169/1710 (68%), Gaps = 60/1710 (4%) Strand=Plus/Minus Query 36937 TGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCC 36996 |||||||| || | |||| |||||||||||| || | ||| ||| || |||||| Sbjct 815862 TGATCTATGAAGACCCCTCGGTCGGCTGCCATATCGATAATGTTTTTCTGCTTGATCTCC 815803 Query 36997 CAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCTA-AATGT--TGAATAGAA 37053 || || || || || | || || | || | ||| | || ||||| || | | Sbjct 815802 CACACGGTCTTGTAGAGTTCCTTCAAATCACTTGGAATTTCACTAATGTATTGCACACTT 815743 Query 37054 CCATTATGTAACACAATTG--TATTCTTT-ATGTCATTATTCCACATATTTCTACTTATT 37110 |||||||| ||||| | || ||| ||||| | || ||| | |||| | Sbjct 815742 CCATTATGGG---CAATTAGTTGTTGTTTCATGTCTTCATCCCAAAGTCCTCTATCAAAA 815686 Query 37111 AGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTA 37170 || ||| | | || |||||||| || || ||| |||||| | || | ||| ||| Sbjct 815685 AGATCTTTTAGCAGATGTGGATTAACTACGAAAAATTCTCCACTCAGAACACGTCT-GTA 815627 Query 37171 -TATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGA 37229 || || || |||||||||||||||| ||| |||||||| | | ||||| || ||||| Sbjct 815626 GTAGATGTTACTAGTATATGGTTCAAAGGATTCATTATTTCCCAGAATTTGCGAAGTAGA 815567 Query 37230 TGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTT 37289 |||||| |||||||| || | || | ||| |||||||||||| | || ||| | | Sbjct 815566 TGCAGTTGGCATTGGAGCCAGAAGTAATGAATTCCTCAATCCATGTTTCTTTATTTTAGT 815507 Query 37290 TTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAAC----CACATATCATATT 37345 |||||||||| ||||| ||| | || | || | || || ||||| ||| ||| Sbjct 815506 CTTTAGTTCATCCCAATTCCA-ATATTTATTATCAACCTTTACATTCCACATGTCAAATT 815448 Query 37346 GTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAG 37405 ||| ||| |||| ||| |||||| | | | |||||| ||||||||||| || | || || Sbjct 815447 GTAAAATTCCTTGACTAGCTGGACTACCCTGATATGTTTCATAAGGTCCATACACTTGAG 815388 Query 37406 CTAGTTCGCAACTAGA---TTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATAT 37462 | | ||| || |||| ||| | || |||||||| || ||||| |||||| | ||| Sbjct 815387 CCAATTC-CA--TAGACATTTCCAAAGCAGCATAATACATAGTTTCAAAAATTCTTTTAT 815331 Query 37463 TTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCA 37522 ||||| ||| || || || | | ||| | ||||| ||||| |||||||| Sbjct 815330 TTAATTCTTTAGCAGAATCTGATTCATAGGGATATCTTAATAACATAAAAGTATCAGCCA 815271 Query 37523 AACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCA 37582 | || ||||| || || ||||| ||||||||| | |||| ||||| | |||| | Sbjct 815270 ATCCTTGAACCCCTATTCCTATTGGTCTATGTCTTGTATTGGATCTTCTAGCTTCTTCAA 815211 Query 37583 CTGGATAATAATTGATATCTATTATTTTATTTAGATTT--TTAACTAGTATTTTCGTAAT 37640 |||| |||||||| | ||||| ||||||| | |||| | | || ||||| ||||| Sbjct 815210 CTGGGTAATAATTTCTTTCTATAATTTTATCCAAATTTCGTGTAATA--ATTTTTGTAAT 815153 Query 37641 TATTCTCAACTTGTCGAACAT-AAATACGTTATTAT---TA---ACAAATTTACTCAACG 37693 | | | || || || || |||| | || || | || |||||||| | || | Sbjct 815152 T-TGGTAAAGTTTCTTAAAATTAAATTCTTTTTTCTCTGTATCTACAAATTTGCATAATG 815094 Query 37694 AAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTG 37753 |||||| | ||||||||||||||||||||||| | ||| |||||||| Sbjct 815093 CTATAGATGCCAGATTACATACAGCAACTTCATCAGGAGATGTGTATTCAATAATCTCAC 815034 Query 37754 TACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAG 37813 ||| | ||||| || | || ||||| ||||| | ||||| ||||| |||||| | Sbjct 815033 AACATAAGTTACTACATTTTATAGTTCCTAAATTTTTCTGATTCGATTTAGAATTACACG 814974 Query 37814 AATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCC 37873 |||||||||| || || || || ||| |||||| || || | |||| || Sbjct 814973 AATCTTTATAAAGCATGTAAGGGACACCTGTTTCTATCTGGCTCTGTAATATAGCAAACC 814914 Query 37874 ATAAACTTCTTGCTTTAACGATCGCTTTAAt-----ttttttCTTTGTTTCGTATTCTAT 37928 ||||| ||||| ||| || | ||| | | ||||||| | | |||| | | Sbjct 814913 ATAAA--TCTTGTGCTAA-GACTGTTTTTTTCCCCATGTTTTCTTCCT--CATATTTTGT 814859 Query 37929 ATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACA 37988 |||||| || | ||| || | |||||| |||| ||| |||||||| || |||||| Sbjct 814858 ATATAACTTTTCAAATTCTTCACCCCATGTTTCGCTTAACCCTGGACACTCATTTGGACA 814799 Query 37989 CATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAA 38048 ||||| || ||| | || || || || || | || |||||| | ||| || ||||| | Sbjct 814798 CATTAAAGTCCAATTTTTATTTTCTTTAACTCTTTTCATAAAAAGATCTGGAACCCACAC 814739 Query 38049 TGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAG 38108 ||| || | |||| | ||| ||||||| || || ||| |||||||| || Sbjct 814738 AGCATAGAAAAGATCTCGAGCTCTTAATTCTTCTTTTCCATGATTTTTTCTTAAATCTAA 814679 Query 38109 AAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTT 38168 ||| || || || |||| ||||||||||| || || | | | | |||| |||||| Sbjct 814678 AAATTCAAAAATGTCAGAATGCCATGGTTCAATGTATACAGCAAAAGATCCTTTTCTTTT 814619 Query 38169 ATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTAT 38228 | ||||| |||| | ||||||| | || | ||| ||| ||||| ||||||||||| Sbjct 814618 CCCTCCTCCTTGATCTACATATCTAGCAGTATCATTGAATACTCTTAGCATAGGTACTAA 814559 Query 38229 ACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTT-- 38286 || || ||| | || || | || ||||| | | | | ||| ||||| ||| Sbjct 814558 TCCGTTGGATATTCCATTCGTTCCTCTAATATATGAATTTTGACCTCTTATAT--CTTGC 814501 Query 38287 ATCGACAATCCTATTCCACCTGCATGTTTTGAT-ATTAAAGCGCATTGTTTTAACGTATC 38345 | | | ||| || ||||| || ||||||| | ||||| || |||||||| || || || Sbjct 814500 ACTGCAACTCCAATACCACCAGC-TGTTTTGCTAATTAATGCACATTGTTTCAATGTTTC 814442 Query 38346 AAATATACCTTCTAT--ACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGA 38403 || || |||||||| | | | || || |||| || || |||||| ||||||||| Sbjct 814441 GAAAATTCCTTCTATCGAATCTGAT--TTCATTGATAATAAAAAACACGAAGACATTTGT 814384 Query 38404 GGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGAC 38463 || ||||||||| | || ||||||||||||| ||||||| |||| |||| | ||| Sbjct 814383 GGTCTTGGAGTTCCAGAATTGAATAATGTAGGAGTTGCATGTGTGAAATATTTCTGTGAC 814324 Query 38464 AAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACC 38523 | | | ||||||||| | | | | || | ||| | || || || | |||||| Sbjct 814323 ATTAAGTGATATGTTTCAAGTGCTTTTTCCAAATCGTCAATATGGATTCCAATAGATACT 814264 Query 38524 CTCATTAGCATATGTTGTGGTCTTTCTATTATTTT---ATTATTCTGTTTAAGTAGATAC 38580 ||||||| || ||||||||||||||| || ||||| |||| | || |||| ||| Sbjct 814263 CTCATTAACAAATGTTGTGGTCTTTCAATAATTTTCCCATTAATGCGT---AGTAAATAT 814207 Query 38581 GATTTTTCTAATGTTTTTATTCCAAAATAA 38610 || ||||||||| || | ||||| ||| Sbjct 814206 GACCGTTCTAATGTCTTAAAACCAAAGTAA 814177 Score = 260 bits (288), Expect = 1e-64 Identities = 585/870 (67%), Gaps = 18/870 (2%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 || ||||| || |||||| ||| |||||||| || || |||| ||| ||||| Sbjct 2310569 TTCTGATAATCTGCAACTCGCTTTTCAAAAAAATTTGTTTTTCCTTGTAGGGATATGAGA 2310510 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| || | || ||||| | | || ||| | ||| | | || || | | | Sbjct 2310509 TCCATCCAGTTGAATGGATTCTTTGAATGGAAAATTTTGGAAGACCCCAAACATTCCAGT 2310450 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 |||| ||| ||||| ||||| ||||||||||||||||| | | ||||||| || || | | Sbjct 2310449 AATCGATCAGCGACAAATTCGATATACTGAGACATTAATCTAGAATTCATCCCAATTAAA 2310390 Query 11519 TCCACCGGAATAGCAACTGTCAAA-AACTCCT-TTTCTATATTAACCGCATC---AATGA 11573 || || | || | | || | || | | |||||| | || || || || || Sbjct 2310389 TCACAAGGCAAAG--ATTCGCATATAAATGATCTTTCTACTTCTACTGCCTCTTTAACGA 2310332 Query 11574 TTATCGACGTTATAACTTCCTTAGATGGTGGATGT---AATAAATGTTTAAACATTAAAC 11630 | || | | |||||| | | | | || | |||||| || | ||||||| Sbjct 2310331 TATTCTGC---ACAACTTCTTCTGGTAATTTATTTTCTAATAAAC---TATAAATTAAAC 2310278 Query 11631 ACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATC 11690 | |||||| |||| ||||| |||| ||| || | ||||||| ||||| |||| Sbjct 2310277 AGTTAAAATCTGTGTGTAGTCCTTCATCTCGACTAATCAATTCATTACTGAATGTCAATC 2310218 Query 11691 CGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATA 11750 | | | | | | ||||| | ||||||||| ||| || ||| ||| || | Sbjct 2310217 CATGTAACTTATTTTGCTTTTTAAACCAAAATATTGCACAGAAACTTCCACTAAATAAAA 2310158 Query 11751 TTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCC 11810 |||| || || |||| ||| |||| |||||| || | || | | ||||| Sbjct 2310157 TTCCTTCTACGCATGCATTTGCCACTATCCTTTCTGCAAAGGAATTAGTATCATTTATCC 2310098 Query 11811 ATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA 11870 |||| ||||| ||||| |||||||| | || |||||||||| | ||||| Sbjct 2310097 ATTTGGCTGCCCATAATGCTTTATTTTTTACAGCTGGTATATTTTCTATAGCATGAAATA 2310038 Query 11871 AATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTG 11930 ||| || | ||||| | | ||| ||| || |||| ||||||||||| || |||| | Sbjct 2310037 AATTCAATCTTTCTTTTTCATCCTTTATGTAATTATCAATTAATAAACTGTATGTTTCGG 2309978 Query 11931 AATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTA 11990 |||| |||||||| | |||||||||||| ||| || | |||||||| | || | Sbjct 2309977 AATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCCTCTGTAATTTGAA 2309918 Query 11991 CATCCACATAAAATCTTTCC-GCTAAATTCTCATTTACAATACCATCACTAGATGCAAAA 12049 | | | ||||| ||| | |||||||| || ||||| |||||||| | ||||||| Sbjct 2309917 CTTGT-CGTAAAAACTTACTAGCTAAATTTTCCAAAACAATTCCATCACTTGCTGCAAAA 2309859 Query 12050 AATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCT 12109 ||||||| | |||||||||||| | ||||| | | | ||||||| || |||| | | Sbjct 2309858 AATGCTAAAACATGTTTTATAAAATGCTTTTCATTATCATTTAATTTTTCGAAATCTTTT 2309799 Query 12110 AAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATAC 12169 ||||| | |||||||||| ||| || | |||||||| ||| ||| || |||||| Sbjct 2309798 AAATCACTCGATAAATCTATTTCCTCCGCTGTCCAAAATGATGCTTCTGCTTTTTTATAA 2309739 Query 12170 ATTTTCCAGATATCATGATACTTAATAGGG 12199 | | ||| | ||| ||||| ||| ||| Sbjct 2309738 AAATCCCACACATCTGGATACAAAATGGGG 2309709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468520448575920