Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq13 289 4e-73 >seq13 Length=2538962 Score = 289 bits (320), Expect = 4e-73 Identities = 982/1514 (65%), Gaps = 39/1514 (3%) Strand=Plus/Minus Query 65163 AGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTA 65222 || ||||| ||||||||||| |||||||||| || || | | ||| || ||| Sbjct 815676 AGCAGATGTGGATTAACTACGAAAAATTCTCCACTCAGAACACGTCTGTAGTAGATGTTA 815617 Query 65223 CTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 65282 || ||||| ||||| | || ||||||||||||| |||||| | ||| |||||||| ||| Sbjct 815616 CTAGTATATGGTTCAAAGGATTCATTATTTCCCAGAATTTGCGAAGTAGATGCAGTTGGC 815557 Query 65283 ATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGT 65342 || || |||| | ||| ||| || | || | | | | |||||| ||||| Sbjct 815556 ATTGGAGCCAGAAGTAATGAATTCCTCAATCCATGTTTCTTTATTTTAGTCTTTAGTTCA 815497 Query 65343 TCCCAATTCCA------AAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATA 65396 ||||||||||| | ||| | |||| ||||| ||| Sbjct 815496 TCCCAATTCCAATATTTATTATCAACCTTTACA---TTCCACATGTCAAATTGTAAAATT 815440 Query 65397 CCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTC 65455 || | ||| || | || | ||| |||||| || || ||||| | | | ||| | ||| Sbjct 815439 CCTTGACTAGCTGGACTACCCT-GATATGTTTCATAAGGTCCATACACTTGAGCCAATTC 815381 Query 65456 ACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTG 65515 | | || || ||| | ||||| || ||||| || || | ||||||| |||| Sbjct 815380 CATAGACATTTCCAAAGCAGCATAATACATAGTTTCAAAAATTCTTTTATTTAATTCTTT 815321 Query 65516 TGCTTCCAGGCT--ATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGA 65573 || | || ||| | ||||| |||| | ||||| | || || ||||||||| Sbjct 815320 AGC--AGAATCTGATTCATAGGGATATCTTAATAACATAAAAGTATCAGCCAATCCTTGA 815263 Query 65574 ACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAA 65633 || || || || || ||||||||||| |||| || || ||||||| || || ||| Sbjct 815262 ACCCCTATTCCTATTGGTCTATGTCTTGTATTGGATCTTCTAGCTTCTTCAACTGGGTAA 815203 Query 65634 TAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGT 65693 ||||| | ||||||||||||| | ||||| ||| | ||| | | | ||| Sbjct 815202 TAATTTCTTTCTATAATTTTATCCAAATTTCGTGTAATAATTTTTGTAATTTGGTAAAGT 815143 Query 65694 TTGAGAAAATCAAA-TCGCTCATCTAT-----TACAAACATGTTCAATGCAACAGATGCC 65747 || ||||| ||| || | ||| | |||||| || ||||| | ||||||| Sbjct 815142 TTCTTAAAATTAAATTCTTTTTTCTCTGTATCTACAAATTTGCATAATGCTATAGATGCC 815083 Query 65748 AGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTA 65807 |||||||| || || || |||| || | | |||| || |||||| || | ||| Sbjct 815082 AGATTACATACAGCAACTTCATCAGGAGATGTGTATTCAATAATCTCACAACATAAGTTA 815023 Query 65808 CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAA 65867 ||||| || || ||||||||||||| ||||| || ||||||| ||| |||||| Sbjct 815022 CTACATTTTATAGTTCCTAAATTTTTCTGATTCGATTTAGAATTACACGAATCTTTATAA 814963 Query 65868 AGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGA 65927 || ||| | || ||| ||||| ||||| | || || || ||| | || | Sbjct 814962 AGCATGTAAGGGACACCTGTTTCTATCTGGCTCTGTAATATAGCAAACCATAAATCTTGT 814903 Query 65928 GCCTTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACAATCGTTCG 65984 || || | | ||| | | | |||||| || ||| |||||| || ||| Sbjct 814902 GC---TAAGACTGTTTTTTTCCCCATGTTTTCTTCCTCATATTTTGTATATAACTTTTCA 814846 Query 65985 AACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCAC 66044 || || || ||||| | | || || ||||| |||| |||||||| || | ||| Sbjct 814845 AATTCTTCACCCCATGTTTCGCTTAACCCTGGACACTCATTTGGACACATTAAAGTCCAA 814786 Query 66045 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAA 66103 | | | || || |||| ||||||||| ||||| |||| ||| | ||| ||| || | Sbjct 814785 TTTTTATTTTCTTTAACTCTTTTCATAAAAAGATCTGGAACCCACACAGC-ATAGAAAAG 814727 Query 66104 ATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 66163 ||||| | ||| ||| || ||||| ||| ||| | | ||| | || | | ||| Sbjct 814726 ATCTCGAGCTCTTAATTCTTCTTTTCCATGATTTTTTCTTAAATCTAAAAATTCAAAAAT 814667 Query 66164 ATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTG 66223 ||| ||||||| ||||| | ||||| || | | ||| | ||| |||||| || Sbjct 814666 GTCAGAATGCCATGGTTCAATGTATACAGCAAAAGATCCTTTTCTTTTCCCTCCTCCTTG 814607 Query 66224 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCATTGGATG 66282 ||||| |||||||| || | ||| | ||||| | ||| || | |||| || |||||| Sbjct 814606 ATCTACATATCTAGCAGTATCATTGAATACTCTTAGCATAGGTACTAAT-CCGTTGGATA 814548 Query 66283 TACCATTGGTCCCGGAGATATAGCTTCCACTTG--CACGAATATTACTAATTGATAGACC 66340 | ||||| || || ||||| | ||| | | |||| | || | || Sbjct 814547 TTCCATTCGTTCCTCTAATATA--TGAATTTTGACCTCTTATATCTTGCACTGCAACTCC 814490 Query 66341 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 66400 || || || || |||| |||||||| ||| |||| || || || | || || || Sbjct 814489 AATACCACCAGCTGTTTTGCTAATTAATGCACATTGTTTCAATGTTTCGAAAATTCCTTC 814430 Query 66401 TATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 66459 ||| ||| ||| || ||| || |||||| ||||||||| | | ||||| Sbjct 814429 TATCGAATCTGATTTCATTGATAA-TAAAAAACACGAAGACATTTGTGGTCTTGGAGTTC 814371 Query 66460 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 66519 | | ||| ||||| ||||||| || || || || |||| | || | || | || | Sbjct 814370 CAGAATTGAATAATGTAGGAGTTGCATGTGTGAAATATTTCTGTGACATTAAGTGATATG 814311 Query 66520 TCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATG 66578 | |||| ||| || | ||| || | ||| ||||| | | || | |||||||| Sbjct 814310 TTTCAAGTGCTTTTTCCAAATCGTCAAT-ATGGATTCCAATAGATACTCTCATTAACAAA 814252 Query 66579 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 66638 || || |||||||||| || || || || | || || || ||| || || Sbjct 814251 TGTTGTGGTCTTTCAATAATTTTCCCATTAATGCGTAGTAAATATGACCGTTCTAATGTC 814192 Query 66639 TTAAAACCAAAATA 66652 ||||||||||| || Sbjct 814191 TTAAAACCAAAGTA 814178 Score = 197 bits (218), Expect = 2e-45 Identities = 377/547 (69%), Gaps = 10/547 (2%) Strand=Plus/Minus Query 36164 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 36223 ||||| |||||| || || |||| |||||| ||||| || || || | ||| | Sbjct 2310272 AAATCTGTGTGTAGTCCTTCATCTCGACTAATCAATTCATTACTGAATGTCAATCCATGT 2310213 Query 36224 A--TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATT 36280 | ||| ||||||||| ||||||||| | | || || |||| ||| |||||| Sbjct 2310212 AACTTATTTT--GCTTTTTAAACCAAAATATTG-CACAGAAACTTCCACTAAATAAAATT 2310156 Query 36281 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCAC 36340 |||||||| ||| || | | || ||| || | | | |||| |||||| Sbjct 2310155 CCTTCTACGCATGCATTTGCCACTATCCTTTCTGCAAAGGAATTAGTATCATTTATCCAT 2310096 Query 36341 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 36400 || ||||| || || ||||||||| || || | |||||||||| ||| | | Sbjct 2310095 TTGGCTGCCCATAATGCTTTATTTTTTACAGCTGGTATATTTTCTATAGCATGAAATAAA 2310036 Query 36401 TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 36460 | | |||| || ||| || | || ||||||| || | ||| || |||| ||| Sbjct 2310035 TTCAATCTTTCTTTTTCATCCTTTATGTAATTATCAATTAATAAACTGTATGTTTCGGAA 2309976 Query 36461 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 36520 || || ||||||| || |||||||| || || | | ||||| ||||| || ||| Sbjct 2309975 TGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCCTCTGTAATTTGAACT 2309916 Query 36521 TCT-GTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 36578 | | ||| ||| | | || ||||||||||| || ||||| ||||| |||||||||| Sbjct 2309915 TGTCGTAAAAACT--TACTAGCTAAATTTTCCAAAACAATTCCATCACTTGCTGCAAAAA 2309858 Query 36579 ACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGA 36638 | || || |||||||||||||||| ||||| || ||| ||| | |||| || | Sbjct 2309857 ATGCTAAAACATGTTTTATAAAATGCTTTTCATTATCATTTAATTTTTCGAAATCTTTTA 2309798 Query 36639 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 36698 ||| | |||| ||| | ||| ||| |||||||||||||||| ||||| |||||||| | Sbjct 2309797 AATCACTCGATAAATCTATTTCCTCCGCTGTCCAAAATGATGCTTCTGCTTTTTTATAAA 2309738 Query 36699 TATTCCA 36705 || ||| Sbjct 2309737 AATCCCA 2309731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658166687220120