Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq13 369 5e-97 >seq13 Length=2538962 Score = 369 bits (408), Expect = 5e-97 Identities = 1030/1559 (66%), Gaps = 45/1559 (3%) Strand=Plus/Minus Query 79000 TTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACT 79059 || || ||||||| ||| | | ||| || | | || | || ||||| ||||||||| Sbjct 815718 TTCATGTCTTCATCCCAAAGTCCTCTATCAAAAAGATCTTTTAGCAGATGTGGATTAACT 815659 Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || |||||||||| || || | | ||| || ||||| ||||||||||| | Sbjct 815658 ACGAAAAATTCTCCACTCAGAACACGTCTGTAGTAGATGTTACTAGTATATGGTTCAAAG 815599 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 |||||||||||||||| |||||| | ||| ||||| |||||||| || |||| | ||| Sbjct 815598 GATTCATTATTTCCCAGAATTTGCGAAGTAGATGCAGTTGGCATTGGAGCCAGAAGTAAT 815539 Query 79180 CTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCA 79239 ||| || | || | | | |||||| ||||| ||||||| |||| | | Sbjct 815538 GAATTCCTCAATCCATGTTTCTTTATTTTAGTCTTTAGTTCATCCCAATTCCAATATTTA 815479 Query 79240 GACGGGACA---ACATTCCAAAGATCATATTGTAGAATACCGTTACTAGC-GTATGATCC 79295 || |||||||| | ||| |||||| ||| || | |||||| | | | || Sbjct 815478 TTATCAACCTTTACATTCCACATGTCAAATTGTAAAATTCCTTGACTAGCTGGACTACCC 815419 Query 79296 TGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCC 79355 || ||||||||||||||||| | | || || ||||| | | || || || | Sbjct 815418 TGA-TATGTTTCATAAGGTCCATACACTTGAGCCAATTCCATAGACATTTCCAAAGCAGC 815360 Query 79356 GTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCT---TCTAGGCTATCAAA 79412 ||||| || ||||| ||||| | ||||| | |||| || ||| | | ||| | Sbjct 815359 ATAATACATAGTTTCAAAAATTCTTTTATTTAATTCTTTAGCAGAATCT--GAT-TCATA 815303 Query 79413 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCT 79472 ||||| |||| | ||||| | || || ||||||||||| || || || || ||||| Sbjct 815302 GGGATATCTTAATAACATAAAAGTATCAGCCAATCCTTGAACCCCTATTCCTATTGGTCT 815243 Query 79473 ATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 79532 |||||| |||| || || ||||||| || || |||||||| | ||||||||||| Sbjct 815242 ATGTCTTGTATTGGATCTTCTAGCTTCTTCAACTGGGTAATAATTTCTTTCTATAATTTT 815183 Query 79533 ATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGT-- 79590 || | ||| | || | ||| | | | ||||| ||||| |||| | Sbjct 815182 ATCCAAATTTCGTGTAATAATTTTTGTAATTTGGTAAAGTTTCTTAAAATTAAATTCTTT 815123 Query 79591 ---CCATCTAT-TACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTC 79646 | | ||| |||||| || || || | ||||||||||||||| || || || || Sbjct 815122 TTTCTCTGTATCTACAAATTTGCATAATGCTATAGATGCCAGATTACATACAGCAACTTC 815063 Query 79647 ATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAA 79706 || || | | |||| || || ||| || | ||||||||| || || |||||||| Sbjct 815062 ATCAGGAGATGTGTATTCAATAATCTCACAACATAAGTTACTACATTTTATAGTTCCTAA 815003 Query 79707 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGT 79766 ||||| ||||| || ||||||| ||| |||||||| ||| | || ||| || Sbjct 815002 ATTTTTCTGATTCGATTTAGAATTACACGAATCTTTATAAAGCATGTAAGGGACACCTGT 814943 Query 79767 TTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACT---T 79823 ||| ||||| | || || || ||| | || | || || ||||| | Sbjct 814942 TTCTATCTGGCTCTGTAATATAGCAAACCATAAATCTTGTGC------TA-AGACTGTTT 814890 Query 79824 GTATCTC----TTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAA 79879 | || | |||||| || |||| ||||||||| ||| || || || ||||| Sbjct 814889 TTTTCCCCATGTTTTCTTCCTCATATTTTGTATATAACTTTTCAAATTCTTCACCCCATG 814830 Query 79880 CATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTA 79939 ||| ||| || ||||| || | |||||||| || | ||| | | || || || | Sbjct 814829 TTTCGCTTAACCCTGGACACTCATTTGGACACATTAAAGTCCAATTTTTATTTTCTTTAA 814770 Query 79940 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGC 79998 ||| ||||||||| ||||| |||| ||| | ||| ||| || ||||||| | ||| Sbjct 814769 CTCTTTTCATAAAAAGATCTGGAACCCACACAGC-ATAGAAAAGATCTCGAGCTCTTAAT 814711 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || ||||| ||| ||| | | ||| | || | | ||| ||||||||||| ||| Sbjct 814710 TCTTCTTTTCCATGATTTTTTCTTAAATCTAAAAATTCAAAAATGTCAGAATGCCATGGT 814651 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 80118 || | ||||| || | | ||| || ||| |||||| ||||||| |||||||| Sbjct 814650 TCAATGTATACAGCAAAAGATCCTTTTCTTTTCCCTCCTCCTTGATCTACATATCTAGCA 814591 Query 80119 GTGTTATTATAAACTCTCAACATTGG-AATAATACCATTGGATGTACCATTGGTCCCGGA 80177 || | ||| | ||||| | ||| || | |||| || |||||| | ||||| || || Sbjct 814590 GTATCATTGAATACTCTTAGCATAGGTACTAAT-CCGTTGGATATTCCATTCGTTCCTCT 814532 Query 80178 GATAT---AGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCAT 80234 |||| | || || | | |||| | || | || || || || || | Sbjct 814531 AATATATGAATTTTGAC---CTCTTATATCTTGCACTGCAACTCCAATACCACCAGCTGT 814475 Query 80235 TTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAAT 80294 ||| |||||||| ||| |||| || || || | || || ||||| ||| | Sbjct 814474 TTTGCTAATTAATGCACATTGTTTCAATGTTTCGAAAATTCCTTCTATCGAATCTGATTT 814415 Query 80295 CA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGG 80353 || || ||| || |||||| ||||||||| | | |||||| | ||| ||||| | Sbjct 814414 CATTGATAA-TAAAAAACACGAAGACATTTGTGGTCTTGGAGTTCCAGAATTGAATAATG 814356 Query 80354 TAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATT 80413 |||||| || || || || |||| | |||| || | || || |||| ||| || Sbjct 814355 TAGGAGTTGCATGTGTGAAATATTTCTGTGACATTAAGTGATATGTTTCAAGTGCTTTTT 814296 Query 80414 CTATATC-CCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCA 80472 | | ||| || | ||| ||||| | | || | |||||||| || || ||||||||| Sbjct 814295 CCAAATCGTCAAT-ATGGATTCCAATAGATACTCTCATTAACAAATGTTGTGGTCTTTCA 814237 Query 80473 ACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATA 80531 | || || ||| || | || || || ||| || || ||||||||||| || Sbjct 814236 ATAATTTTCCCATTAATGCGTAGTAAATATGACCGTTCTAATGTCTTAAAACCAAAGTA 814178 Score = 194 bits (214), Expect = 2e-44 Identities = 333/477 (70%), Gaps = 10/477 (2%) Strand=Plus/Minus Query 50036 GCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTCCTTCTACTGCG 50094 ||||||||| ||||||||| | | || || ||| ||| || ||||||||||| Sbjct 2310202 GCTTTTTAAACCAAAATATTG-CACAGAAACTTCCACTAAATAAAATTCCTTCTACGCAT 2310144 Query 50095 GCAAAGGCAACAAGTCTCTCTCCATA---ACTGGCGCTGTCATGTATCCACTTTTGAGCC 50151 ||| || || | || ||| || | | | | | |||| |||||| || ||| Sbjct 2310143 GCATTTGCCACTATCCTTTCTGCAAAGGAATTAG---TATCATTTATCCATTTGGCTGCC 2310087 Query 50152 CAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttt 50211 || || || ||||||||| || || ||||||| |||| ||| | || | || Sbjct 2310086 CATAATGCTTTATTTTTTACAGCTGGTATATTTTCTATAGCATGAAATAAATTCAATCTT 2310027 Query 50212 tCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTT 50271 || || ||| || | ||| |||| || || | ||| || |||| ||||| || ||| Sbjct 2310026 TCTTTTTCATCCTTTATGTAATTATCAATTAATAAACTGTATGTTTCGGAATGTATATTT 2309967 Query 50272 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT-GTACA 50330 |||| || || ||||| || || | | ||||| ||||| || |||| | ||| | Sbjct 2309966 TCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCCTCTGTAATTTGAACTTGTCGTAAA 2309907 Query 50331 AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 50390 || | | |||||||||||| || ||||| ||||| ||||||||||| || || || Sbjct 2309906 AACTTACT-AGCTAAATTTTCCAAAACAATTCCATCACTTGCTGCAAAAAATGCTAAAAC 2309848 Query 50391 ATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 50450 ||||||||||||||| ||||| || ||| ||| | |||| || | ||| | || Sbjct 2309847 ATGTTTTATAAAATGCTTTTCATTATCATTTAATTTTTCGAAATCTTTTAAATCACTCGA 2309788 Query 50451 TATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 50507 || ||||| ||| ||| |||||||||||||||| ||||| |||||||| | || ||| Sbjct 2309787 TAAATCTATTTCCTCCGCTGTCCAAAATGATGCTTCTGCTTTTTTATAAAAATCCCA 2309731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718262129078520