Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq13 179 4e-40 >seq13 Length=2538962 Score = 179 bits (198), Expect = 4e-40 Identities = 561/855 (66%), Gaps = 23/855 (3%) Strand=Plus/Minus Query 13569 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13628 || || ||| ||| ||||| || ||||| |||||||| || || ||||| |||| Sbjct 2310581 ATGACTCCCGATTTCTGATAATCTGCAACTCGCTTTTCAAAAAAATTTGTTTTTCCTTGT 2310522 Query 13629 AGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCT 13688 || ||||| ||||| | | |||||||| |||| || | ||| | | || Sbjct 2310521 AGGGATATGAGATCCATCCAGTTGAATGGATTCTTTGAATGGAAAATTTTGGAAGACCCC 2310462 Query 13689 AGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTC 13748 | | ||||||| |||||| | ||| || ||||| ||||||||||| | ||||| Sbjct 2310461 AAACATTCCAGTAATCGATCAGCGACAAATTCGATATACTGAGACATTAATCTAGAATTC 2310402 Query 13749 ATACCTATTAGTTTTACAGGAATTATATTGGT-TAAAAATTCTTTTTCTATAGACACAGC 13807 || || |||| | ||| | | ||| | || |||| | |||||| || || Sbjct 2310401 ATCCCAATTAAATCACAAGGCAA-AGATTCGCATATAAATGATCTTTCTACTTCTACTGC 2310343 Query 13808 CTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTT--TAAAA 13865 |||||| | ||| | | || || | | | | |||||| | || || Sbjct 2310342 CTCTTTAACGATATTCTGCACAACTTCTTCTG--GTAATTTATTTTCTAATAAACTATAA 2310285 Query 13866 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13925 |||||||| |||||| || || || ||||||| |||||| | ||| || ||| Sbjct 2310284 ATTAAACAGTTAAAATCTGTGTGTAGTCCTTCATCTCGACTAATCAATTCATTACTGAAT 2310225 Query 13926 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAA 13985 || ||||| | | | | | ||||| ||||||||||||||| || || | Sbjct 2310224 GTCAATCCATGTAACTTATTTTGCTTTTTAAACCAAAATATTGCACAGAAACTTCCACTA 2310165 Query 13986 AAGAATATTCCCTCAACTGCA-GCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTT 14044 || || ||||| || || ||| ||| || | || | |||| |||| || | | Sbjct 2310164 AATAAAATTCCTTCTAC-GCATGCATTTGCCACTATCCTTTCTGCAAAGGAATTAGTATC 2310106 Query 14045 GTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAAT 14104 || ||||||||| |||||| | ||| ||||| | | || |||| || Sbjct 2310105 ATT---TATCCATTTGGCTGCCCATAATGCTTTATTTTTTACAGCTGGTATATTTTCTAT 2310049 Query 14105 AGCATTAAATAAAT--ATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAG 14162 ||||| |||||||| | || |||| ||| | ||| | |||| ||||||| | ||| Sbjct 2310048 AGCATGAAATAAATTCAATCTTTCTTTTTCATCCTTTA--TGTAATTATCAATTAATAAA 2309991 Query 14163 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCT 14222 || || |||| || ||||| ||||| | |||||| |||||| |||||| | | || Sbjct 2309990 CTGTATGTTTCGGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCC 2309931 Query 14223 TCCGACCATTGTACTTCCGAGTAAAATCTTTCG-GCCAAATTTTCATTAACTATACCATC 14281 || | ||| |||| |||||| ||| | || |||||||| ||| || ||||| Sbjct 2309930 TCTGTAATTTGAACTTGTC-GTAAAAACTTACTAGCTAAATTTTCCAAAACAATTCCATC 2309872 Query 14282 ACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT---TGAG 14338 ||| |||||||||||||| || | | ||| ||||| | ||| |||||| | | | Sbjct 2309871 ACTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAAT---GCTTTTCATTATCATTTAA 2309815 Query 14339 TTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14398 ||||| |||| |||||| | || | ||||| ||| || |||||||||| || Sbjct 2309814 TTTTTCGAAATCTTTTAAATCACTCGATAAATCTATTTCCTCCGCTGTCCAAAATGATGC 2309755 Query 14399 GACAGCTTTTTTATA 14413 | ||||||||||| Sbjct 2309754 TTCTGCTTTTTTATA 2309740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479723544526200