Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq13 190 2e-43 >seq13 Length=2538962 Score = 190 bits (210), Expect = 2e-43 Identities = 565/857 (66%), Gaps = 27/857 (3%) Strand=Plus/Minus Query 13357 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCC 13416 || || ||| ||| ||||| || ||||| ||||||||||| || ||||| |||| Sbjct 2310581 ATGACTCCCGATTTCTGATAATCTGCAACTCGCTTTTCAAAAAAATTTGTTTTTCCTTGT 2310522 Query 13417 AGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCT 13476 || ||||| ||||| | | ||||||||| |||| || | ||| | | || Sbjct 2310521 AGGGATATGAGATCCATCCAGTTGAATGGATTCTTTGAATGGAAAATTTTGGAAGACCCC 2310462 Query 13477 AGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTC 13536 | | | ||||| |||||| | ||| || ||||| ||||||||||| | ||||| Sbjct 2310461 AAACATTCCAGTAATCGATCAGCGACAAATTCGATATACTGAGACATTAATCTAGAATTC 2310402 Query 13537 ATACCTATTAGTTTTACAGGAATTATATTAGT-TAAAAATTCTTTTTCTATAGACACAGC 13595 || || |||| | ||| | | ||| | || |||| | |||||| || || Sbjct 2310401 ATCCCAATTAAATCACAAGGCAA-AGATTCGCATATAAATGATCTTTCTACTTCTACTGC 2310343 Query 13596 CTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTT--TAAAA 13653 ||| || | ||| ||| | || || | | | | |||||| | || || Sbjct 2310342 CTCTTTAACGATATTCTGCACAACTTCTTCTG--GTAATTTATTTTCTAATAAACTATAA 2310285 Query 13654 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13713 |||||||| |||||| || || || ||||||| |||||| | ||| || ||| Sbjct 2310284 ATTAAACAGTTAAAATCTGTGTGTAGTCCTTCATCTCGACTAATCAATTCATTACTGAAT 2310225 Query 13714 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 13773 || ||||| | | | | | ||||| ||||||||||||||| ||| ||| | Sbjct 2310224 GTCAATCCATGTAACTTATTTTGCTTTTTAAACCAAAATATTGCACAGAAACTTCCACTA 2310165 Query 13774 AAGAATATTCCCTCAACTGCA-GCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTT 13832 || || ||||| || || ||| ||| || | || | |||| |||| || || Sbjct 2310164 AATAAAATTCCTTCTAC-GCATGCATTTGCCACTATCCTTTCTGCAAAGGAA-----TTA 2310111 Query 13833 GTTTGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCG 13890 || | || |||||||| |||||| | ||| ||||| | | || |||| Sbjct 2310110 GTATCATTTATCCATTTGGCTGCCCATAATGCTTTATTTTTTACAGCTGGTATATTTTCT 2310051 Query 13891 ATTGCATTGAATAAATGT--TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTA 13948 || |||| ||||||| || |||| ||| | ||| | |||| ||||||| | || Sbjct 2310050 ATAGCATGAAATAAATTCAATCTTTCTTTTTCATCCTTTA--TGTAATTATCAATTAATA 2309993 Query 13949 AGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAG 14008 | || || |||| || ||||| ||||| | |||||| |||||| |||||| | | | Sbjct 2309992 AACTGTATGTTTCGGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTG 2309933 Query 14009 CTTCTGACCATTGTACCTCCGAGTAAAATCTTTCT-GCCAAGTTTTCATTAACAATACCA 14067 | |||| ||| || | |||||| ||| || || || ||||| |||||| ||| Sbjct 2309932 CCTCTGTAATTTGAACTTGTC-GTAAAAACTTACTAGCTAAATTTTCCAAAACAATTCCA 2309874 Query 14068 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT---TG 14124 ||||| |||||||||||||| || | | ||| ||||| | ||| |||||| | | Sbjct 2309873 TCACTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAAT---GCTTTTCATTATCATTT 2309817 Query 14125 AGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14184 | ||||| |||| |||||| | || | ||||| ||| || |||||||||| Sbjct 2309816 AATTTTTCGAAATCTTTTAAATCACTCGATAAATCTATTTCCTCCGCTGTCCAAAATGAT 2309757 Query 14185 GCGACAGCTTTTTTATA 14201 || | ||||||||||| Sbjct 2309756 GCTTCTGCTTTTTTATA 2309740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478584355106520