Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq13 295 9e-75 >seq13 Length=2538962 Score = 295 bits (326), Expect = 9e-75 Identities = 1007/1555 (65%), Gaps = 35/1555 (2%) Strand=Plus/Minus Query 71082 TTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAAC 71141 ||| || ||||||| ||| | | ||| || | | || | || ||||| |||||||| Sbjct 815719 TTTCATGTCTTCATCCCAAAGTCCTCTATCAAAAAGATCTTTTAGCAGATGTGGATTAAC 815660 Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 ||| |||||||||| || || | | ||| || ||||| ||||| ||||| | Sbjct 815659 TACGAAAAATTCTCCACTCAGAACACGTCTGTAGTAGATGTTACTAGTATATGGTTCAAA 815600 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261 || ||||||||||||| |||||| | ||| |||||||| ||||| || |||| | || Sbjct 815599 GGATTCATTATTTCCCAGAATTTGCGAAGTAGATGCAGTTGGCATTGGAGCCAGAAGTAA 815540 Query 71262 ACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAA-AGAT 71320 ||| || | |||||| |||||| ||||| |||||||||||| | | Sbjct 815539 TGAATTCCTCAATCCATGTTTCTTTATTTTAGTCTTTAGTTCATCCCAATTCCAATATTT 815480 Query 71321 CCGATGGTACA--ACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGC-GTATGATC 71377 || | || || || | |||||| | | | | Sbjct 815479 ATTATCAACCTTTACATTCCACATGTCAAATTGTAAAATTCCTTGACTAGCTGGACTACC 815420 Query 71378 CTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTC 71437 ||| |||||| || || ||||| | || || | ||| | | || || || Sbjct 815419 CTG-ATATGTTTCATAAGGTCCATACACTTGAGCCAATTCCATAGACATTTCCAAAGCAG 815361 Query 71438 CATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCT---TCCGGGCTATCAA 71494 ||||||| || ||||| ||||| | ||||| | |||| || || | ||| Sbjct 815360 CATAATACATAGTTTCAAAAATTCTTTTATTTAATTCTTTAGCAGAATCTGAT---TCAT 815304 Query 71495 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTC 71554 | ||||| |||| | ||||| | || || ||||||||||| || || || || |||| Sbjct 815303 AGGGATATCTTAATAACATAAAAGTATCAGCCAATCCTTGAACCCCTATTCCTATTGGTC 815244 Query 71555 TGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 71614 | ||||| |||| || || ||||||| || || |||||||| | |||||||||| Sbjct 815243 TATGTCTTGTATTGGATCTTCTAGCTTCTTCAACTGGGTAATAATTTCTTTCTATAATTT 815184 Query 71615 TATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATC--- 71671 ||| | ||||| || | ||| | | | ||||| ||||| |||| Sbjct 815183 TATCCAAATTTCGTGTAATAATTTTTGTAATTTGGTAAAGTTTCTTAAAATTAAATTCTT 815124 Query 71672 --TCCCATCTAT-TACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCT 71728 | | | ||| |||||| | || || | ||||||||||||||| || || || | Sbjct 815123 TTTTCTCTGTATCTACAAATTTGCATAATGCTATAGATGCCAGATTACATACAGCAACTT 815064 Query 71729 CATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTA 71788 ||| || | | |||| ||||| ||| || | |||||||| || || ||||||| Sbjct 815063 CATCAGGAGATGTGTATTCAATAATCTCACAACATAAGTTACTACATTTTATAGTTCCTA 815004 Query 71789 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAG 71848 |||||| ||||| || ||||||| ||| |||||||| || | || ||| | Sbjct 815003 AATTTTTCTGATTCGATTTAGAATTACACGAATCTTTATAAAGCATGTAAGGGACACCTG 814944 Query 71849 TTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGT 71908 |||| ||||| | || || || ||| | || | || | | | || || Sbjct 814943 TTTCTATCTGGCTCTGTAATATAGCAAACCATAAATCTTGTGCTAAGACTGTTTTTTTCC 814884 Query 71909 ATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT 71968 | |||||| || |||| ||||||||| ||| || || || ||||| | | | Sbjct 814883 CCATGTTTTCTTCCTCATATTTTGTATATAACTTTTCAAATTCTTCACCCCATGTTTCGC 814824 Query 71969 CTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTT 72028 ||| || ||||| ||||| |||||||| || | ||| | | || || || |||| || Sbjct 814823 TTAACCCTGGACACTCATTTGGACACATTAAAGTCCAATTTTTATTTTCTTTAACTCTTT 814764 Query 72029 TCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCG 72087 ||||||| ||||| |||| ||| | ||| ||| || ||||||| | ||| || || Sbjct 814763 TCATAAAAAGATCTGGAACCCACACAGC-ATAGAAAAGATCTCGAGCTCTTAATTCTTCT 814705 Query 72088 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 72147 ||||| ||| ||| | | ||| | || | | ||| ||||||||||| ||||| | | Sbjct 814704 TTTCCATGATTTTTTCTTAAATCTAAAAATTCAAAAATGTCAGAATGCCATGGTTCAATG 814645 Query 72148 TATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 72207 |||| || | | ||| | ||| |||||| ||||||| |||||||| || | | Sbjct 814644 TATACAGCAAAAGATCCTTTTCTTTTCCCTCCTCCTTGATCTACATATCTAGCAGTATCA 814585 Query 72208 TTATAAACTCTCAACATTGG-AATAATACCATTGGATGCACCATTGGTCCCGGAGATAT- 72265 || | ||||| | ||| || | |||| || |||||| ||||| || || |||| Sbjct 814584 TTGAATACTCTTAGCATAGGTACTAAT-CCGTTGGATATTCCATTCGTTCCTCTAATATA 814526 Query 72266 --AGCTTCCACTGGCACGAATA--TTGCTAATTGATAGACCTATTCCCCCTGCCATTTTA 72321 | || || | | ||| |||| | || | || || || || || |||| Sbjct 814525 TGAATTTTGAC---CTCTTATATCTTGC--ACTGCAACTCCAATACCACCAGCTGTTTTG 814471 Query 72322 GAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-T 72380 |||||||| ||| |||| || || || | || || ||||| ||| ||| | Sbjct 814470 CTAATTAATGCACATTGTTTCAATGTTTCGAAAATTCCTTCTATCGAATCTGATTTCATT 814411 Query 72381 GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGG 72440 | ||| || |||||| ||||||||| | | |||||| | ||| ||||| ||||| Sbjct 814410 GATAA-TAAAAAACACGAAGACATTTGTGGTCTTGGAGTTCCAGAATTGAATAATGTAGG 814352 Query 72441 AGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTAT 72500 || || || || || |||| | |||| || | || || |||| ||| ||| | Sbjct 814351 AGTTGCATGTGTGAAATATTTCTGTGACATTAAGTGATATGTTTCAAGTGCTTTTTCCAA 814292 Query 72501 ATC-CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGA 72559 ||| || | ||| ||||| | | || | |||||||| ||| || |||||||||| | Sbjct 814291 ATCGTCAAT-ATGGATTCCAATAGATACTCTCATTAACAAATGTTGTGGTCTTTCAATAA 814233 Query 72560 TCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 72614 | || ||| || | || || || ||| || || ||||||||||| || Sbjct 814232 TTTTCCCATTAATGCGTAGTAAATATGACCGTTCTAATGTCTTAAAACCAAAGTA 814178 Score = 185 bits (204), Expect = 1e-41 Identities = 380/558 (68%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 42071 AAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130 ||||| ||| || || ||||||| |||||| ||||| || || || | ||| | Sbjct 2310272 AAATCTGTGTGTAGTCCTTCATCTCGACTAATCAATTCATTACTGAATGTCAATCCATGT 2310213 Query 42131 A--TTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATT 42187 | ||| ||||||||| ||||||||| | | || || |||| ||| || ||| Sbjct 2310212 AACTTATTTT--GCTTTTTAAACCAAAATATTG-CACAGAAACTTCCACTAAATAAAATT 2310156 Query 42188 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCAC 42247 |||||||| ||| || | | || ||| || | | | |||| |||||| Sbjct 2310155 CCTTCTACGCATGCATTTGCCACTATCCTTTCTGCAAAGGAATTAGTATCATTTATCCAT 2310096 Query 42248 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 42307 || ||||| || || ||||||||| || || ||||||| |||| ||| | | Sbjct 2310095 TTGGCTGCCCATAATGCTTTATTTTTTACAGCTGGTATATTTTCTATAGCATGAAATAAA 2310036 Query 42308 TAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAA 42367 | | |||| || ||| || | || |||| || || | ||| || |||| ||| Sbjct 2310035 TTCAATCTTTCTTTTTCATCCTTTATGTAATTATCAATTAATAAACTGTATGTTTCGGAA 2309976 Query 42368 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACT 42427 || || ||||||| || || ||||| || || | | ||||| |||| || ||| Sbjct 2309975 TGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCCTCTGTAATTTGAACT 2309916 Query 42428 TCT-GTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAA 42486 | | ||| ||| | | |||||||||||| || ||||| ||||| ||||||||||| Sbjct 2309915 TGTCGTAAAAACTTACT-AGCTAAATTTTCCAAAACAATTCCATCACTTGCTGCAAAAAA 2309857 Query 42487 CGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGAT 42546 || || |||||||||||||||| ||||| | ||||||| | |||| || | Sbjct 2309856 TGCTAAAACATGTTTTATAAAATGCTTTTCATTATCATTTAATTTTTCGAAATCTTTTAA 2309797 Query 42547 ATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACAT 42606 ||| | |||| ||||| ||| || | |||||||||||||||||||| |||||||| | Sbjct 2309796 ATCACTCGATAAATCTATTTCCTCCGCTGTCCAAAATGATGCTTCTGCTTTTTTATAAAA 2309737 Query 42607 ATTCCAGATATCATGATA 42624 || ||| | ||| |||| Sbjct 2309736 ATCCCACACATCTGGATA 2309719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671132966794680