Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq13 98.7 1e-15 seq11 84.2 2e-11 >seq13 Length=2538962 Score = 98.7 bits (108), Expect = 1e-15 Identities = 223/335 (67%), Gaps = 3/335 (1%) Strand=Plus/Minus Query 157277 TCCTCGTAATGTTTGTACCAGTATTCAAAGTCATCACCATACGTATCGTTGAGCTTAGGA 157336 ||||| || | | | || | | |||||| || ||||| | || ||| | | | ||| Sbjct 814872 TCCTCATATTTTGTATATAACTTTTCAAATTCTTCACCCCATGTTTCGCTTAACCCTGGA 814813 Query 157337 CACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAATATA 157396 ||||| || ||||||||||| | ||| | ||||||| ||| | ||||||||| | | Sbjct 814812 CACTCATTTGGACACATTAAAGTCCAATTTTTATTTTCTTTAACTCTTTTCATAAAAAGA 814753 Query 157397 TCGGGAACCCATAAAGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATGTTT 157456 || |||||||| | ||| | | | ||| || ||| | ||||| | ||| ||| Sbjct 814752 TCTGGAACCCACACAGCATAGAAAAGATCTCGAGCTCTTAATTCTTCTTTTCCATGATTT 814693 Query 157457 CGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGG 157516 | | | ||||| || | |||||| ||||||| ||||||| ||| || || Sbjct 814692 TTTCTTAAATCTAAAAATTCAAAAATGTCAGAATGCCATGGTTCAATGTATACAGCAAAA 814633 Query 157517 GCTCCTTTTCGCTT---GCCACCTTGATCCACGTGACGCACCATATTATTAAAAACTCGC 157573 | |||||||| || || |||||||| || | | | ||| ||| || |||| Sbjct 814632 GATCCTTTTCTTTTCCCTCCTCCTTGATCTACATATCTAGCAGTATCATTGAATACTCTT 814573 Query 157574 AGCATTGGTAGCAGTCCGCTGGCGGTGCCGTTCGT 157608 ||||| |||| | |||| ||| | || ||||| Sbjct 814572 AGCATAGGTACTAATCCGTTGGATATTCCATTCGT 814538 >seq11 Length=2227116 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTC 143034 || ||||| | || || || || || ||||| || || ||| || || || ||||| Sbjct 206673 ACCAAATGTAAAGTGGACTCCTTCTGAATGTTATAGTCAGCTAAT-GTTCTGCCATCTTC 206615 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 |||||||| || ||| | || | | || |||||||| || || ||||| || || Sbjct 206614 TAGTTGTTTTCCTGCAAATATTAATCTCTGTTGATCGGGTGGAATTCCTTCCTTATCTTG 206555 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||||||| || | | || | ||| || | | || || |||| || | || || Sbjct 206554 AATTTTTGCCTTAACATTCTCAATCGTATCAGATGACTCGACATCAAGGGTGATGGTTTT 206495 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| ||||||||||||||||||||||| Sbjct 206494 TCCGGTTAATGTTTTTACGAATATTTGCAT 206465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507009691103760