Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq13 123 2e-23 seq11 100 2e-16 >seq13 Length=2538962 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| || | | ||||||||| | || || || ||||| || || ||||| | Sbjct 759178 CCACCTCTTAAACGGAGAACTAAATGTAAAGTAGATTCCTTTTGGATATTATAATCTGAT 759119 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | |||||||||||||| || || |||| || | ||| ||||| |||| Sbjct 759118 AATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGCTGGTCAGGTGGA 759059 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||||| || ||||| ||| || |||| || || || || || Sbjct 759058 ATTCCTTCTTTATCTTGTATTTTAGCCTTGACGTTTTCAATTGTGTCTGATGACTCAACG 758999 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| || |||||||| ||||| | ||| |||||||||||||||||| Sbjct 758998 TCTAGTGTGATGGTTTTTCCTGTTAAAGTCTTTACAAAAATTTGCATA 758951 Score = 89.7 bits (98), Expect = 4e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| || | | ||||||||| | || || || ||||| || || ||||| | Sbjct 758950 CCACCTCTTAAACGGAGAACTAAATGTAAAGTTGATTCCTTTTGGATATTATAATCTGAT 758891 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | |||||||||||||| || || |||| || | ||| ||||| |||| Sbjct 758890 AATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGCTGGTCAGGTGGA 758831 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATC 15303 ||||||||||| || ||||| ||| || |||| || ||||| Sbjct 758830 ATTCCTTCTTTATCTTGTATTTTAGCCTTGACGTTTTCAATTGTATC 758784 >seq11 Length=2227116 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | ||||| || || || ||||| || || || |||| | |||||| Sbjct 206673 ACCAAATGTAAAGTGGACTCCTTCTGAATGTTATAGTCAGCTAATGTTCTGCCATCTTCT 206614 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| || || |||| || | ||||| ||| |||||||||||| || || | Sbjct 206613 AGTTGTTTTCCTGCAAATATTAATCTCTGTTGATCGGGTGGAATTCCTTCCTTATCTTGA 206554 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| ||| | || || ||||| || ||||| | ||| |||||||| Sbjct 206553 ATTTTTGCCTTAACATTCTCAATCGTATCAGATGACTCGACATCAAGGGTGATGGTTTTT 206494 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAA 15372 || || | |||||||| || |||||||| || | ||| Sbjct 206493 CCGGTTAATGTTTTTACGAATATTTGCATTTTGGTAAA 206456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362175920354163