Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq13 125 5e-24 seq11 107 1e-18 >seq13 Length=2538962 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 43893 AACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGT 43952 |||| ||||| || | | || ||||||| || || ||||| ||||||||||| Sbjct 759180 AACCACCTCTTAAACGGAGAACTAAATGTAAAGTAGATTCCTTTTGGATATTATAATCTG 759121 Query 43953 TTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 |||| | |||| || |||||||||||||||||||| || | ||||||||| | | Sbjct 759120 ATAATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGCTGGTCAGGTG 759061 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | |||||||||||| ||||| ||||| | ||| || |||| | ||| | Sbjct 759060 GAATTCCTTCTTTATCTTGTATTTTAGCCTTGACGTTTTCAATTGTGTCTGATGACTCAA 759001 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || || ||||| || ||||||||||| ||||| |||||||| Sbjct 759000 CGTCTAGTGTGATGGTTTTTCCTGTTAAAGTCTTTACAAAAATTTGCAT 758952 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| || | | || ||||||| || || ||||| ||||||||||| Sbjct 758951 ACCACCTCTTAAACGGAGAACTAAATGTAAAGTTGATTCCTTTTGGATATTATAATCTGA 758892 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 |||| | |||| || |||||||||||||||||||| || | ||||||||| | || Sbjct 758891 TAATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGCTGGTCAGGTGG 758832 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||||||| ||||| ||||| | ||| ||||||| | ||| || Sbjct 758831 AATTCCTTCTTTATCTTGTATTTTAGCCTTGACGTTTTCAATTGTATCTGATGACTCAAC 758772 Query 44074 ATCGACCGTAATTGTTTTACC 44094 || | || || ||||| || Sbjct 758771 GTCCAGTGTGATGGTTTTTCC 758751 >seq11 Length=2227116 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||||| ||| ||| || ||||| ||||| || |||| | |||| || Sbjct 206673 ACCAAATGTAAAGTGGACTCCTTCTGAATGTTATAGTCAGCTAATGTTCTGCCATCTTCT 206614 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | |||||||||||||||||| || | || || || | || | ||||| |||||| | Sbjct 206613 AGTTGTTTTCCTGCAAATATTAATCTCTGTTGATCGGGTGGAATTCCTTCCTTATCTTGA 206554 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 |||||| || || | ||| ||||| | | ||| ||||| | || || ||||| Sbjct 206553 ATTTTTGCCTTAACATTCTCAATCGTATCAGATGACTCGACATCAAGGGTGATGGTTTTT 206494 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||||| || || || ||||||||||| Sbjct 206493 CCGGTTAATGTTTTTACGAATATTTGCAT 206465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354774387377964