Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq13 183 3e-41 >seq13 Length=2538962 Score = 183 bits (202), Expect = 3e-41 Identities = 557/847 (66%), Gaps = 29/847 (3%) Strand=Plus/Minus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||| ||||| || ||||| ||||||||||| ||||||||||||| || || || Sbjct 2310570 TTTCTGATAATCTGCAACTCGCTTTTCAAAAAAATTTGTTTTTCCTTGTAGGGATATGAG 2310511 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTT---ACACCCTAA---TTC 12972 ||||| | | ||| ||||| || ||| | | | |||| | |||| || ||| Sbjct 2310510 ATCCATCCAGTTGAATGGATTCTTTGAA---TGGAAAATTTTGGAAGACCCCAAACATTC 2310454 Query 12973 TAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCC 13032 ||||| || ||||| ||||| || || ||||| |||||| | | ||||| || Sbjct 2310453 CAGTAA---TCGATCAGCGACAAATTCGATATACTGAGACATTAATCTAGAATTCATCCC 2310397 Query 13033 TATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGAT 13092 ||||| | ||||| || ||| || ||| | |||||| || ||||| || | Sbjct 2310396 AATTAAATCACAAGGCAAAGATTCGCATATAAATGATCTTTCTACTTCTACTGCCTCTTT 2310337 Query 13093 AACTATGTCTCTTATTACGTTCTC----TAATGGAGGATTTGATAGATGCTTAAACATCA 13148 ||| || | ||| | |||| |||| | | | ||| | || | || | Sbjct 2310336 AACGATAT-TCTGCACAACTTCTTCTGGTAATTTATTTTCTAATAAAC---TATAAATTA 2310281 Query 13149 TACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTA 13208 ||| |||||| ||| | ||||||||||| ||| || | || || ||||| | Sbjct 2310280 AACAGTTAAAATCTGTGTGTAGTCCTTCATCTCGACTAATCAATTCATTACTGAATGTCA 2310221 Query 13209 GACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGC-AAACGAACCCGaaaaa 13267 || | | | | ||||||| ||||||||| ||| |||| | | ||| | Sbjct 2310220 ATCCATGTAACTTATTTTGCTTTTTAAACCAAAATATTGCACAGAAACTTCCACTAAATA 2310161 Query 13268 aaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTC 13327 || |||||||| || |||| || | | |||||| || | | | || | | | | Sbjct 2310160 AA-ATTCCTTCTACGCATGCATTTGCCACTATCCTTTCTGCAAAGGAATTAGTATCATT- 2310103 Query 13328 TCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTCATATTTTCTATTGC 13386 |||||| || ||||| |||||| | ||| || || | | ||||||||||| || Sbjct 2310102 --TATCCATTTGGCTGCCCATAATGCTTTATTTTTTACAGCTGGT-ATATTTTCTATAGC 2310046 Query 13387 GTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATA 13446 | |||||||| | |||| || || || ||| |||| || ||||| || || Sbjct 2310045 ATGAAATAAATTCAATCTTTCTTTTTCATCCTTTATGTAATTATCAATTAATAAACTGTA 2309986 Query 13447 CATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGA 13506 |||| ||||| |||||||| | |||||||| ||| |||||| | | ||||||| Sbjct 2309985 TGTTTCGGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCCTCTGT 2309926 Query 13507 TACCTGAACTTCGGAGTAAAATCTTTCT-GCTAAGTTTTCGTTAACTATCCCGTCACTAG 13565 | ||||||| | |||||| ||| || ||||| ||||| ||| || || ||||| | Sbjct 2309925 AATTTGAACTT-GTCGTAAAAACTTACTAGCTAAATTTTCCAAAACAATTCCATCACTTG 2309867 Query 13566 CAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACC 13625 | |||||||| || | | || || ||||| | ||||| || || || ||| Sbjct 2309866 CTGCAAAAAATGCTAAAACATGTTTTATAAAATGCTTTTCATTATCATTTAATTTTTCGA 2309807 Query 13626 AATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685 ||||| ||||| | |||||||||| ||||| | |||||||| || || | || | Sbjct 2309806 AATCTTTTAAATCACTCGATAAATCTATTTCCTCCGCTGTCCAAAATGATGCTTCTGCTT 2309747 Query 13686 TCTTATA 13692 | ||||| Sbjct 2309746 TTTTATA 2309740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430978497319686