Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq11 174 4e-38 seq13 152 1e-31 >seq11 Length=2227116 Score = 174 bits (192), Expect = 4e-38 Identities = 167/214 (78%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| | |||||| || || || |||||||| |||||||||| || ||||| || ||||| Sbjct 206674 TACCAAATGTAAAGTGGACTCCTTCTGAATGTTATAGTCAGCTAATGTTCTGCCATCTTC 206615 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 |||||||||||| ||||| |||| ||||||||||| || || |||||||| ||||| || Sbjct 206614 TAGTTGTTTTCCTGCAAATATTAATCTCTGTTGATCGGGTGGAATTCCTTCCTTATCTTG 206555 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||| ||||| || ||||| || | ||||| | || || || || || || || || Sbjct 206554 AATTTTTGCCTTAACATTCTCAATCGTATCAGATGACTCGACATCAAGGGTGATGGTTTT 206495 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || | ||||||||| ||||| ||||||||| Sbjct 206494 TCCGGTTAATGTTTTTACGAATATTTGCATTTTG 206461 >seq13 Length=2538962 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| | || |||| |||||| |||||||| || || |||||||| || ||| Sbjct 759178 CCACCTCTTAAACGGAGAACTAAATGTAAAGTAGATTCCTTTTGGATATTATAATCTGAT 759119 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||| || ||||||| ||||||||| ||||| |||| || || || ||||| || Sbjct 759118 AATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGCTGGTCAGGTGGA 759059 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 |||||||||||||| || || || || || || ||||| | || || | || || Sbjct 759058 ATTCCTTCTTTATCTTGTATTTTAGCCTTGACGTTTTCAATTGTGTCTGATGACTCAACG 758999 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || || || || || | || |||||||| || ||||| Sbjct 758998 TCTAGTGTGATGGTTTTTCCTGTTAAAGTCTTTACAAAAATTTGCAT 758952 Score = 132 bits (146), Expect = 1e-25 Identities = 164/223 (74%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 104310 AGTCTTTCCATACTTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATT 104369 ||||||| || | || | || || ||||||| | || |||| |||||| || |||| Sbjct 758972 AGTCTTTACAAAAATT-TGCATACCACCTCTTAAACGGAGAACTAAATGTAAAGTTGATT 758914 Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 | || || |||||||| || |||| ||||| || ||||||| ||||||||| ||||| | Sbjct 758913 CCTTTTGGATATTATAATCTGATAATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATA 758854 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 ||| || || || ||||| || |||||||||||||| || || || || || || |||| Sbjct 758853 TTAATCTTTGCTGGTCAGGTGGAATTCCTTCTTTATCTTGTATTTTAGCCTTGACGTTTT 758794 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACC 104532 | | ||||| | || || || ||||| || || || || Sbjct 758793 CAATTGTATCTGATGACTCAACGTCCAGTGTGATGGTTTTTCC 758751 Score = 113 bits (124), Expect = 1e-19 Identities = 339/515 (66%), Gaps = 10/515 (2%) Strand=Plus/Plus Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTG-GAAAAA 268818 || || |||||||| | || ||| ||||| | || ||| |||| ||||| |||||| Sbjct 2309755 GCATCATTTTGGACAGCGGAGGAAATAGATTTATCGAGTGATTTAAAAGATTTCGAAAAA 2309814 Query 268819 TTTAAAACCAGAAGAAAGAAGATTT-ATATCTTATATTCTTGCGTTTTTTGCAGTTAGTG 268877 || ||| | || || | |||| ||| || || | || |||||||||| |||| Sbjct 2309815 TT--AAATGATAATGAAAAGCATTTTATAAAACATGTTTTAGCATTTTTTGCAGCAAGTG 2309872 Query 268878 ATGGTATCGTTAACGAAAATCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 |||| || ||| |||||| ||| ||| ||||| | | | | || || ||| | || Sbjct 2309873 ATGGAATTGTTTTGGAAAATTTAGCTAGT-AAGTTTTTACGACAAGTTCAAATTACAGAG 2309931 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 || | | ||||| || || |||||| | |||||||| ||||| || | |||||| Sbjct 2309932 GCAAAAAAATTTTATTCTTTTCAAATAGCTGTTGAAAATATACATTCCGAAACATACAGT 2309991 Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATG 269056 ||||||| |||| ||| ||| | ||| | || |||| | ||||| | |||| Sbjct 2309992 TTATTAATTGATAATTACATAAAGGATGAAAAAGAAAGATTGAATTTATTTCATGCTATA 2310051 Query 269057 AGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGC 269116 || ||| ||| | ||| ||| | |||||| ||||||||||| |||| Sbjct 2310052 GAAAATATACCAGCTGTAAAAAATAAAGCATTATGGGCAGCCAAATGGATAAATGATACT 2310111 Query 269117 GCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGG 269176 | | | ||||||| |||| || ||| |||||||| || || ||| || Sbjct 2310112 AATTCCTTTGCAGAAAGGATAGTGGCAAATGCATGCGTAGAAGGAATTTTATTTAGTGGA 2310171 Query 269177 TCTTTTGCCGCTATCTTTTGGTTGAAGAA--AAGAGGCCTTATGCCAGGATTAACTTTCT 269234 ||| || || |||||||| || || || | ||| | ||||| || ||| Sbjct 2310172 AGTTTCTGTGCAATATTTTGGTTTAAAAAGCAAAATAAGTTA--CATGGATTGACATTCA 2310229 Query 269235 CTAACGAATTGATAAGCAGGGACGAAGGTTTACAC 269269 ||| |||||||| || | || ||||| ||||| Sbjct 2310230 GTAATGAATTGATTAGTCGAGATGAAGGACTACAC 2310264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151387439047044