Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq8 214 2e-50 seq5 131 2e-25 >seq8 Length=1849747 Score = 214 bits (236), Expect = 2e-50 Identities = 480/712 (67%), Gaps = 23/712 (3%) Strand=Plus/Plus Query 164392 AATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTC 164451 |||| || ||||||||| | ||| |||||| ||||||| ||||||| || || Sbjct 1750383 AATTTCAACTTTGAAGAATTAGGAATAGGTGCACTAGATGAAGAATTTAAAACAATATTT 1750442 Query 164452 AGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAA 164511 ||||| | ||||| |||| | ||| | | ||||||||| | ||||| ||| Sbjct 1750443 AGACGGACCTTTGCAAGTAGAATATATCCGAATTATATAATAAAACAGTTAGGTATAAAA 1750502 Query 164512 CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGA 164571 ||| | |||||| || ||||| |||| || |||||| |||||||||||||| ||| || Sbjct 1750503 CATGTGAAAGGACTTATATTATATGGGCCCCCTGGTACTGGTAAAACATTAATAGCTAGA 1750562 Query 164572 TGCATTGCTCAAGCTTTTAAATCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTG 164631 || | || | || || | ||| ||||||| ||||||| || ||| |||| Sbjct 1750563 CAGATAGGAAAAACATTGAATGCACGAGAACCTAAAATTATTAATGGCCCAGAAATATTA 1750622 Query 164632 AACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAA 164691 || || ||||| || | ||||||| || | |||| || ||| | || || ||| | Sbjct 1750623 AATAAGTATGTGGGACAATCAGAAGAAAACATCCGAAACTTATTTAAAGATGCGGAACTA 1750682 Query 164692 GAACA-AAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGA 164750 ||| | ||| |||| ||| | | ||||| |||| |||| ||||| ||||| Sbjct 1750683 GAATATAAACAAAG-TGGTGAAAATTCACTTTTACACATTATCATTTTGGATGAAATAGA 1750741 Query 164751 TGC--TCT-TTGCAAAAAACGTGGTG----ATAATATTATTCATG-----ATG-CAG--T 164795 ||| ||| | | | | | || | | | | | | || | ||| ||| | Sbjct 1750742 TGCAATCTGTCGACAGAGAGGTAGCGCCGCTTCAAGTGGTACAGGAGTAAATGACAGTAT 1750801 Query 164796 GGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGT 164855 || ||||||||||| || ||||| |||||||| | || |||||||| || | | Sbjct 1750802 TGTGAATCAGTTGCTATCAAAAATTGATGGTGTTAATAGTTTGAATAATATCCTACTAAT 1750861 Query 164856 AGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGA 164915 || ||||| ||| || ||||||||||||||||||||| || |||||||| |||| || Sbjct 1750862 TGGAATGACAAACAGAATTGATTTAATTGATGATGCTTTGTTGAGACCTGGTAGATTCGA 1750921 Query 164916 ATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTCA 164975 ||| | ||||||||| | || | || |||||| | ||||||||||||| |||| Sbjct 1750922 ATTACACATAGAAATATCCCTTCCGAATAAGGAAGGAAGAATTCAAATTTTAAATATTCA 1750981 Query 164976 TGTGGCTAAA---ATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAAAT 165032 | | ||| |||||| | ||| | || ||| ||||| || | || | Sbjct 1750982 T---ACAAAAAGTATGAAAAAAAGCAATAAACTAAGTCCAGATGTTAATATTGTAGAACT 1751038 Query 165033 AGCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGA 165084 |||| |||| |||| | |||||| ||| |||| |||||||||||| Sbjct 1751039 GGCTGAAAAAACACCTAATTTTTCTGGTGCAGAAATAGAAGGATTAGTAAGA 1751090 >seq5 Length=1204002 Score = 131 bits (144), Expect = 2e-25 Identities = 400/605 (66%), Gaps = 15/605 (2%) Strand=Plus/Minus Query 6806 TTAATTGTTCTTTTATAGCTTT-TATATGATCTAAATAAATATGAGCATCTCCTAGCGTA 6864 |||||||| ||||| |||| | || || | ||| | |||||||| ||| | | Sbjct 866370 TTAATTGTGTTTTTA-AGCTGTCTACGTGGTTATTATACACATGAGCATTTCCCAAAATG 866312 Query 6865 TGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCA 6924 || || || | | |||| || || | | || ||||| | || ||| || | | | Sbjct 866311 TGTATGAACTGTGCAGGTTGCAAATTACATACCTGTGCAATCATATGTGTGAAAATGGAA 866252 Query 6925 TAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTG- 6983 ||||| || | ||||| || || ||||| |||| ||| ||||||||||| ||| Sbjct 866251 TAAGAGGCAATGTTAAAGGGAACTCCTAAACCCAAATCACAGGATCTTTGATA-CATAAT 866193 Query 6984 ACAAGATAAAATATTGTCTATAGCATAAAATTGACACAATACATGACATGGAGGTAAAAC 7043 ||| ||||| || || | | |||||||||| || || | |||||| || ||||| | Sbjct 866192 ACATGATAATTTACCATCAAAAACATAAAATTGGCATAAAATATGACAAGGTGGTAATGC 866133 Query 7044 AGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATT 7103 | ||||| ||| | |||||| ||| || | ||| | ||| | |||| || Sbjct 866132 CATTTTATCTAAATCTTTTACATTCCATGCACACAAAATAATTCTCCTACTAGTTGG-TT 866074 Query 7104 TGTTTTTAATTTTGTTA-TAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAG 7162 || || ||| | | | | ||| ||||||||| | || | ||| ||||||| Sbjct 866073 CATTCTTTATTAAATCAATCACATTTTTTAATTGATCAACTCCTTTGTCTTTATAATTAT 866014 Query 7163 TATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTA 7222 ||| |||| |||| | ||| ||||| |||||||| ||||| ||||||||||| |||| Sbjct 866013 CATGCATATTTGTATATTCAGCACCAAAGTGTCTCCACTGAAAACCATAAATAGGCCCTA 865954 Query 7223 AATCACCTTCTTCACGATGATTAAATCCTAATCGATTTAAATTAGATT---TTGATCCAT 7279 ||||| | |||| | || |||| | || ||| | ||| | | ||||| Sbjct 865953 AATCATTTACTTCTC---TATCAAATAATTTTCTATTATCCAAAAATTCCCTCGTTCCAT 865897 Query 7280 AAGCATCCCAAATATGTACAGAtttttttGATAAATTTA-AAGAATTTGTAGATCCTTTA 7338 || ||||| || ||| | |||| || | || | || |||||| |||| | Sbjct 865896 TTGCTTCCCATATTCTTAC-GTTTTTATTTAAAAGTGTATTTCCATTTGTTTCTCCTCGA 865838 Query 7339 AGGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAA 7398 | ||||||||| | |||||| | |||||| | ||| | | | ||||| || | | || Sbjct 865837 ATGAACCATAATAATTCTTCAATTATTCCTCTTAGAAATAATTTCTTTGTTGTCAGT-AA 865779 Query 7399 GGGAA 7403 ||||| Sbjct 865778 GGGAA 865774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595866465838800