Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq13 132 4e-26 seq11 120 3e-22 >seq13 Length=2538962 Score = 132 bits (146), Expect = 4e-26 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| || || | || || || ||||||||||||||||| | |||||||| | Sbjct 759178 CCACCTCTTAAACGGAGAACTAAATGTAAAGTAGATTCCTTTTGGATATTATAATC--TG 759121 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 ||| |||| ||| || | |||||||| |||| |||||||||||||| || || | Sbjct 759120 ATAATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGCTGGTCAGGTG 759061 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| |||||||| || | ||||| ||||||||| | | ||||| | || | Sbjct 759060 GAATTCCTTCTTTATCTTGTATTTTAGCCTTGACGTTTTCAATTGTGTCTGATGACTCAA 759001 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| | |||||||||||||| || | ||| || ||||| || ||||| Sbjct 759000 CGTCTAGTGTGATGGTTTTTCCTGTTAAAGTCTTTACAAAAATTTGCAT 758952 Score = 113 bits (124), Expect = 4e-20 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||| || || | || || || ||||| ||||||||||| | Sbjct 758963 AAAAATTTGCATACCACCTCTTAAACGGAGAACTAAATGTAAAGTTGATTCCTTTTGGAT 758904 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 |||||||| | ||| |||| ||| || | |||||||| |||| ||||||||| Sbjct 758903 ATTATAATC--TGATAATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTT 758846 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||| || || ||||| |||||||| || | ||||| ||||||||| | | || Sbjct 758845 TGCTGGTCAGGTGGAATTCCTTCTTTATCTTGTATTTTAGCCTTGACGTTTTCAATTGTA 758786 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCC 94980 || | || ||||| | |||||||||||||| Sbjct 758785 TCTGATGACTCAACGTCCAGTGTGATGGTTTTTCC 758751 >seq11 Length=2227116 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGGAATCCTC 94857 ||||| || ||||| || ||||| || | |||||| || ||| || || || ||| || Sbjct 206673 ACCAAATGTAAAGTGGACTCCTTCTGAATGTTATAGTCAGCTAAT-GTTCTGCCATCTTC 206615 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || |||||||| |||| |||||||| || ||||| || ||||| ||||| || || | Sbjct 206614 TAGTTGTTTTCCTGCAAATATTAATCTCTGTTGATCGGGTGGAATTCCTTCCTTATCTTG 206555 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 |||||||||||| || | | || |||| ||||| |||| ||||||||||| Sbjct 206554 AATTTTTGCCTTAACATTCTCAATCGTATCAGATGACTCGACATCAAGGGTGATGGTTTT 206495 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || | ||||| || || || ||||| Sbjct 206494 TCCGGTTAATGTTTTTACGAATATTTGCAT 206465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448287036495480