Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq13 178 1e-39 >seq13 Length=2538962 Score = 178 bits (196), Expect = 1e-39 Identities = 559/859 (65%), Gaps = 21/859 (2%) Strand=Plus/Minus Query 21147 AGAAAACATTATCTTCtttttttGACATAATTCCCATTTTTTGATAATCACTAACTCTTT 21206 |||| || | ||| | | | | || ||| | |||| ||| |||||||| ||||| | Sbjct 2310607 AGAAGACCTGATCCTTTCTCTGTGCCATGACTCCCGATTTCTGATAATCTGCAACTCGCT 2310548 Query 21207 TTTCGAAAAAATTTGTCTTTCCTTCCAATGATAT-AGATTCCATAAAATCAAATGGATTT 21265 |||| ||||||||||| ||||||| | ||||| |||| |||| | | |||||||| Sbjct 2310547 TTTCAAAAAAATTTGTTTTTCCTTGTAGGGATATGAGAT-CCATCCAGTTGAATGGATTC 2310489 Query 21266 TCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAATCTATCTGCTACAAATTCT 21325 | || | || ||||| | | |||| | | ||||| ||| || |||||||| Sbjct 2310488 TTTGAATGGAAAATTTTGGAAGACCCCAAACATTCCAGTAATCGATCAGCGACAAATTCG 2310429 Query 21326 ATATATTGACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTC 21385 ||||| ||| |||||||| | ||||||| || || || | ||| | || || Sbjct 2310428 ATATACTGAGACATTAATCTAGAATTCATCCCAATTAAATCACAAGGCAAAGATTCGCAT 2310369 Query 21386 AAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACTA 21445 | ||| ||| |||||| || || || || ||||| | | | | | || Sbjct 2310368 ATAAATGATCTTTCTACTTCTACTGCCTCTTTAACGATATTCTGCA--CAACTTCTTCT- 2310312 Query 21446 GGGGGATACAAT----AATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTC 21501 || || | | ||| || | || ||||| |||||| || | ||||| Sbjct 2310311 -GGTAATTTATTTTCTAATAAACTATAAATTAAACAGTTAAAATCTGTGTGTAGTCCTTC 2310253 Query 21502 ATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCA--TTAATCCTCTCTTTTTT 21559 ||| | ||| || ||||||||| ||||| || || | | ||| | | |||||| Sbjct 2310252 ATCTCGACTAATCAATTCATTACTGAATGTCAATCCATGTAACTTATT--TTGCTTTTTA 2310195 Query 21560 AACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGC 21618 ||||||||||||| | || | || || ||| ||||| || || ||| ||| ||| Sbjct 2310194 AACCAAAATATTG-CACAGAAACTTCCACTAAATAAAATTCCTTCTACGCATGCATTTGC 2310136 Query 21619 AACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGC 21678 |||| | ||| | | | | | |||| ||||||||| |||||||| ||| Sbjct 2310135 CACTATCCTTTCTGCAAAGGAA---TTAGTATCATTTATCCATTTGGCTGCCCATAATGC 2310079 Query 21679 CTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGAtttttttCATCTAC 21738 || | ||| | | || | || ||||| | || | || | |||| | | | Sbjct 2310078 TTTATTTTTTACAGCTGGTATATTTTCTATAGCATGAAATAAATTCAATCTTTCTTTTTC 2310019 Query 21739 ATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGC 21798 ||| ||||| ||| || |||| |||||||||||||| | || Sbjct 2310018 ATCCTTTATGTAATTATCAATTAATAAACTGTATGTTTCGGAATGTATATTTTCAACAGC 2309959 Query 21799 TATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTG 21858 ||| ||||| ||||| | ||||||||| | |||||| | | ||||| | | Sbjct 2309958 TATTTGAAAAGAATAAAATTTTTTTGCCTCTGTAATTTGAACTT-GTCGTAAAAACTTAC 2309900 Query 21859 -AGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTA 21917 ||| || ||||| || ||||||||||| || ||||||||||| || | || ||||| Sbjct 2309899 TAGCTAAATTTTCCAAAACAATTCCATCACTTGCTGCAAAAAATGCTAAAACATGTTTTA 2309840 Query 21918 TAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTA 21977 |||||| ||| ||||| ||||||||| ||||| |||||| | |||||||||| Sbjct 2309839 TAAAATGCTTTTCATTATCATTTAATTTTTCGAAATCTTTTAAATCACTCGATAAATCTA 2309780 Query 21978 CTTCTTCAGTTGTCCAAAA 21996 ||| || | ||||||||| Sbjct 2309779 TTTCCTCCGCTGTCCAAAA 2309761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531895859971320