Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq13 298 7e-76 >seq13 Length=2538962 Score = 298 bits (330), Expect = 7e-76 Identities = 985/1515 (65%), Gaps = 41/1515 (3%) Strand=Plus/Minus Query 62319 AGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTA 62378 || ||||| ||||||||||| |||||||||| || || | | ||| || ||| Sbjct 815676 AGCAGATGTGGATTAACTACGAAAAATTCTCCACTCAGAACACGTCTGTAGTAGATGTTA 815617 Query 62379 CTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 62438 || ||||| ||||| | || ||||||||||||| |||||| | ||| |||||||| ||| Sbjct 815616 CTAGTATATGGTTCAAAGGATTCATTATTTCCCAGAATTTGCGAAGTAGATGCAGTTGGC 815557 Query 62439 ATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGT 62498 || || |||| | ||| ||| || | || | | | | |||||| ||||| Sbjct 815556 ATTGGAGCCAGAAGTAATGAATTCCTCAATCCATGTTTCTTTATTTTAGTCTTTAGTTCA 815497 Query 62499 TCCCAATTCCAAAG------ATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATA 62552 |||||||||||| ||| | |||| ||||| ||| Sbjct 815496 TCCCAATTCCAATATTTATTATCAACCTTTACA---TTCCACATGTCAAATTGTAAAATT 815440 Query 62553 CCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTC 62611 || | ||| || | || | ||| |||||| || || ||||| | | | ||| | ||| Sbjct 815439 CCTTGACTAGCTGGACTACCCTG-ATATGTTTCATAAGGTCCATACACTTGAGCCAATTC 815381 Query 62612 ACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTG 62671 | | || || ||| | ||||| || ||||| || || | ||||||| |||| Sbjct 815380 CATAGACATTTCCAAAGCAGCATAATACATAGTTTCAAAAATTCTTTTATTTAATTCTTT 815321 Query 62672 TGCTTCCAGGCTA--TCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGA 62729 || | || ||| | ||||| |||| | ||||| | || || ||||||||| Sbjct 815320 AGCAG--AATCTGATTCATAGGGATATCTTAATAACATAAAAGTATCAGCCAATCCTTGA 815263 Query 62730 ACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAA 62789 || || || || || ||||||||||| |||| || || ||||||| || || ||| Sbjct 815262 ACCCCTATTCCTATTGGTCTATGTCTTGTATTGGATCTTCTAGCTTCTTCAACTGGGTAA 815203 Query 62790 TAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGT 62849 ||||| | ||||||||||||| | ||||| ||| | ||| | | | ||| Sbjct 815202 TAATTTCTTTCTATAATTTTATCCAAATTTCGTGTAATAATTTTTGTAATTTGGTAAAGT 815143 Query 62850 TTGAGAAAATCAAATCGC-----CCATCTAT-TACAAACATGTTCAAGGCAACAGATGCC 62903 || ||||| |||| | | ||| |||||| || || || | ||||||| Sbjct 815142 TTCTTAAAATTAAATTCTTTTTTCTCTGTATCTACAAATTTGCATAATGCTATAGATGCC 815083 Query 62904 AGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTA 62963 |||||||| || || || |||| || | | |||| || |||||| || | ||| Sbjct 815082 AGATTACATACAGCAACTTCATCAGGAGATGTGTATTCAATAATCTCACAACATAAGTTA 815023 Query 62964 CTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAA 63023 ||||| || |||||||||||||||| ||||| || ||||||| ||| |||||| Sbjct 815022 CTACATTTTATAGTTCCTAAATTTTTCTGATTCGATTTAGAATTACACGAATCTTTATAA 814963 Query 63024 AGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGA 63083 || ||| | || ||| ||||| ||||| | || || || ||| | || | Sbjct 814962 AGCATGTAAGGGACACCTGTTTCTATCTGGCTCTGTAATATAGCAAACCATAAATCTTGT 814903 Query 63084 GCCTTTATTATAGATTTGTATCTCCT-TTCTCTT--TCGTATAGTGTATACAATCGTTCG 63140 || || | | ||| | | | | || |||| || ||| |||||| || ||| Sbjct 814902 GC---TAAGACTGTTTTTTTCCCCATGTTTTCTTCCTCATATTTTGTATATAACTTTTCA 814846 Query 63141 AACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCAC 63200 || || || ||||| | | || || ||||| |||| |||||||| || | ||| Sbjct 814845 AATTCTTCACCCCATGTTTCGCTTAACCCTGGACACTCATTTGGACACATTAAAGTCCAA 814786 Query 63201 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAG 63259 | | | || || |||| ||||||||| ||||| |||| ||| | ||| ||| || || Sbjct 814785 TTTTTATTTTCTTTAACTCTTTTCATAAAAAGATCTGGAACCCACACAGC-ATAGAAAAG 814727 Query 63260 ATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 63319 ||||| | ||| ||| || ||||| ||| ||| | | ||| | || | | ||| Sbjct 814726 ATCTCGAGCTCTTAATTCTTCTTTTCCATGATTTTTTCTTAAATCTAAAAATTCAAAAAT 814667 Query 63320 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTG 63379 ||||||||||| ||||| | ||||| || | | ||| | ||| |||||| || Sbjct 814666 GTCAGAATGCCATGGTTCAATGTATACAGCAAAAGATCCTTTTCTTTTCCCTCCTCCTTG 814607 Query 63380 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCGTTTGATA 63438 ||||| |||||||| || | ||| | ||||| | ||| || | |||| ||||| |||| Sbjct 814606 ATCTACATATCTAGCAGTATCATTGAATACTCTTAGCATAGGTACTAAT-CCGTTGGATA 814548 Query 63439 TACCATTGGTACCGGAGATAT---AGCTTCCACTGGCACGAATATTACTAATTGATAGAC 63495 | ||||| || || |||| | || || | | |||| | || | | Sbjct 814547 TTCCATTCGTTCCTCTAATATATGAATTTTGAC---CTCTTATATCTTGCACTGCAACTC 814491 Query 63496 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCT 63555 | || || || || |||| |||||||| ||| |||| || || || | || || | Sbjct 814490 CAATACCACCAGCTGTTTTGCTAATTAATGCACATTGTTTCAATGTTTCGAAAATTCCTT 814431 Query 63556 CTATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63614 |||| ||| ||| || ||| || |||||| ||||||||| | | |||| Sbjct 814430 CTATCGAATCTGATTTCATTGATAA-TAAAAAACACGAAGACATTTGTGGTCTTGGAGTT 814372 Query 63615 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63674 || | ||| ||||| ||||||| || || || || |||| | || | || | || Sbjct 814371 CCAGAATTGAATAATGTAGGAGTTGCATGTGTGAAATATTTCTGTGACATTAAGTGATAT 814312 Query 63675 GTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACAT 63733 || |||| ||| || | ||| || | ||| ||||| | | || | |||||||| Sbjct 814311 GTTTCAAGTGCTTTTTCCAAATCGTCAAT-ATGGATTCCAATAGATACTCTCATTAACAA 814253 Query 63734 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63793 || || |||||||||| || || || || | || || || ||| || || Sbjct 814252 ATGTTGTGGTCTTTCAATAATTTTCCCATTAATGCGTAGTAAATATGACCGTTCTAATGT 814193 Query 63794 TTTAAAACCAAAATA 63808 ||||||||||| || Sbjct 814192 CTTAAAACCAAAGTA 814178 Score = 179 bits (198), Expect = 5e-40 Identities = 322/465 (69%), Gaps = 4/465 (1%) Strand=Plus/Minus Query 33380 GCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCA- 33438 ||||||||| ||||||||| | | ||| |||| ||| || ||||||||||| ||| Sbjct 2310202 GCTTTTTAAACCAAAATATTGCACAGAAACTTCCACTAAATAAAATTCCTTCTAC-GCAT 2310144 Query 33439 GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAA 33498 ||| || | | || ||| || | | |||| |||||| || ||||| Sbjct 2310143 GCATTTGCCACTATCCTTTCTGCAAAGGAATTAGTATCATTTATCCATTTGGCTGCCCAT 2310084 Query 33499 TCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCA 33558 || || ||||||||| || || ||||||| |||| ||| | || | |||| Sbjct 2310083 AATGCTTTATTTTTTACAGCTGGTATATTTTCTATAGCATGAAATAAATTCAATCTTTCT 2310024 Query 33559 TTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCA 33618 || ||| || | ||| |||| || || | ||| || |||| ||||| || |||||| Sbjct 2310023 TTTTCATCCTTTATGTAATTATCAATTAATAAACTGTATGTTTCGGAATGTATATTTTCA 2309964 Query 33619 ATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT-GTACAAAA 33677 | || || ||||| || || | | ||||| ||||| || |||| | ||| ||| Sbjct 2309963 ACAGCTATTTGAAAAGAATAAAATTTTTTTGCCTCTGTAATTTGAACTTGTCGTAAAAAC 2309904 Query 33678 TCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 33737 | | || |||||||| || ||||| ||||| ||||||||||| || || ||||| Sbjct 2309903 TTACTA-GCTAAATTTTCCAAAACAATTCCATCACTTGCTGCAAAAAATGCTAAAACATG 2309845 Query 33738 TTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATAT 33797 ||||||||||| ||||| | ||| ||| | |||| || | ||| | |||| Sbjct 2309844 TTTTATAAAATGCTTTTCATTATCATTTAATTTTTCGAAATCTTTTAAATCACTCGATAA 2309785 Query 33798 ATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 33842 ||||| ||| ||| |||||||||||||||| ||||| |||||||| Sbjct 2309784 ATCTATTTCCTCCGCTGTCCAAAATGATGCTTCTGCTTTTTTATA 2309740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622941414377880