Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5 174 4e-38 >seq5 Length=1204002 Score = 174 bits (192), Expect = 4e-38 Identities = 328/477 (69%), Gaps = 4/477 (1%) Strand=Plus/Plus Query 111313 ATTTTCCACTTCTCACAACAAAGCGAACATATTGGAAG-GGAATTGTCGAAGAACTTCTG 111371 ||||||| | || ||||||||| | || || ||| ||||| | |||||| | | Sbjct 865771 ATTTTCCCTTACTGACAACAAAGAAATTAT-TTCTAAGAGGAATAATTGAAGAATTATTA 865829 Query 111372 TGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGG 111431 ||||| ||||| ||| ||||||| |||| |||| | ||||| |||| ||| ||| Sbjct 865830 TGGTTCATTCGAGGAGAAACAAATGGAAATACACTTTTAAATAAAAACGTAAGAATATGG 865889 Query 111432 GATGGAAATGGATCACGTGACTTTCTAGATTC-AGTTGGTCTTGTCGACAACGAAGAAGG 111490 || | ||||||| | | || ||| | ||| || | | | || | |||| | Sbjct 865890 GAAGCAAATGGAACGAGGGAATTTTTGGATAATAGAAAATTATTT-GATAGAGAAGTAAA 865948 Query 111491 TGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCAT 111550 |||| | || || |||| || ||||| ||| | ||||||||||| || || | || || Sbjct 865949 TGATTTAGGGCCTATTTATGGTTTTCAGTGGAGACACTTTGGTGCTGAATATACAAATAT 866008 Query 111551 GCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTAA 111610 ||| || ||| | | ||| |||||||||| | ||||| |||||| ||| || Sbjct 866009 GCATGATAATTATAAAGACAAAGGAGTTGATCAATTAAAAAATGTGATTGATTTAATAAA 866068 Query 111611 GAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAA 111670 ||| | |||||| | | | |||||| || |||||||||| ||| | || || || Sbjct 866069 GAATGAACCAACTAGTAGGAGAATTATTTTGTGTGCATGGAATGTAAAAGATTTAGATAA 866128 Query 111671 AATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||| | ||||| |||||| || | ||||| |||||||| || || | | || Sbjct 866129 AATGGCATTACCACCTTGTCATATTTTATGCCAATTTTATGTTTTTGATGGTAAATTATC 866188 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGC 111787 ||| |||||||| |||| |||| | ||| | || ||||| ||||| ||||| Sbjct 866189 ATGTATTATGTATCAAAGATCCTGTGATTTGGGTTTAGGAGTTCCCTTTAACATTGC 866245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303341192481026