Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq13 293 3e-74 >seq13 Length=2538962 Score = 293 bits (324), Expect = 3e-74 Identities = 984/1515 (65%), Gaps = 41/1515 (3%) Strand=Plus/Minus Query 62174 AGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTA 62233 || ||||| ||||||||||| |||||||||| || || | | ||| || ||| Sbjct 815676 AGCAGATGTGGATTAACTACGAAAAATTCTCCACTCAGAACACGTCTGTAGTAGATGTTA 815617 Query 62234 CTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 62293 || ||||| ||||| | || ||||||||||||| |||||| | ||| |||||||| ||| Sbjct 815616 CTAGTATATGGTTCAAAGGATTCATTATTTCCCAGAATTTGCGAAGTAGATGCAGTTGGC 815557 Query 62294 ATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGT 62353 || || |||| | ||| ||| || | || | | | | |||||| ||||| Sbjct 815556 ATTGGAGCCAGAAGTAATGAATTCCTCAATCCATGTTTCTTTATTTTAGTCTTTAGTTCA 815497 Query 62354 TCCCAATTCCAAAG------ATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATA 62407 |||||||||||| ||| | |||| ||||| ||| Sbjct 815496 TCCCAATTCCAATATTTATTATCAACCTTTACA---TTCCACATGTCAAATTGTAAAATT 815440 Query 62408 CCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTC 62466 || | ||| || | || | ||| |||||| || || ||||| | | | ||| | ||| Sbjct 815439 CCTTGACTAGCTGGACTACCCTG-ATATGTTTCATAAGGTCCATACACTTGAGCCAATTC 815381 Query 62467 ACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTG 62526 | | || || ||| | ||||| || ||||| || || | ||||||| |||| Sbjct 815380 CATAGACATTTCCAAAGCAGCATAATACATAGTTTCAAAAATTCTTTTATTTAATTCTTT 815321 Query 62527 CGCTTCCAGGCTA--TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGA 62584 || | || ||| | ||||| |||| | ||||| | || || ||||||||| Sbjct 815320 AGCAG--AATCTGATTCATAGGGATATCTTAATAACATAAAAGTATCAGCCAATCCTTGA 815263 Query 62585 ACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAA 62644 || || || || || ||||||||||| |||| || || ||||||| || || ||| Sbjct 815262 ACCCCTATTCCTATTGGTCTATGTCTTGTATTGGATCTTCTAGCTTCTTCAACTGGGTAA 815203 Query 62645 TAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGT 62704 ||||| | ||||||||||||| | ||||| ||| | ||| | | | ||| Sbjct 815202 TAATTTCTTTCTATAATTTTATCCAAATTTCGTGTAATAATTTTTGTAATTTGGTAAAGT 815143 Query 62705 TTGAGAAAATCAAATCGC-----CCATCTAT-TACAAACATGTTCAATGCAACAGATGCC 62758 || ||||| |||| | | ||| |||||| || ||||| | ||||||| Sbjct 815142 TTCTTAAAATTAAATTCTTTTTTCTCTGTATCTACAAATTTGCATAATGCTATAGATGCC 815083 Query 62759 AGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTA 62818 |||||||| || || || |||| || | | |||| || |||||| || | ||| Sbjct 815082 AGATTACATACAGCAACTTCATCAGGAGATGTGTATTCAATAATCTCACAACATAAGTTA 815023 Query 62819 CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAA 62878 ||||| || || ||||||||||||| ||||| || ||||||| ||| |||||| Sbjct 815022 CTACATTTTATAGTTCCTAAATTTTTCTGATTCGATTTAGAATTACACGAATCTTTATAA 814963 Query 62879 AGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGA 62938 || ||| | || ||| ||||| ||||| | || || || ||| | || | Sbjct 814962 AGCATGTAAGGGACACCTGTTTCTATCTGGCTCTGTAATATAGCAAACCATAAATCTTGT 814903 Query 62939 GCCTTTATTATAGATTTGTATCTCTT-TTCTCTT--TCGTATAGTGTATACAATCGTTCG 62995 || || | | ||| | | | | || |||| || ||| |||||| || ||| Sbjct 814902 GC---TAAGACTGTTTTTTTCCCCATGTTTTCTTCCTCATATTTTGTATATAACTTTTCA 814846 Query 62996 AACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCAC 63055 || || || ||||| | | | || ||||| |||| |||||||| || | ||| Sbjct 814845 AATTCTTCACCCCATGTTTCGCTTAACCCTGGACACTCATTTGGACACATTAAAGTCCAA 814786 Query 63056 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAG 63114 | | | || || |||| ||||||||| ||||| |||| ||| | ||| ||| || || Sbjct 814785 TTTTTATTTTCTTTAACTCTTTTCATAAAAAGATCTGGAACCCACACAGC-ATAGAAAAG 814727 Query 63115 ATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 63174 ||||| | ||| ||| || ||||| ||| ||| | | ||| | || | | ||| Sbjct 814726 ATCTCGAGCTCTTAATTCTTCTTTTCCATGATTTTTTCTTAAATCTAAAAATTCAAAAAT 814667 Query 63175 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTG 63234 ||||||||||| ||||| | ||||| || | | ||| | ||| |||||| || Sbjct 814666 GTCAGAATGCCATGGTTCAATGTATACAGCAAAAGATCCTTTTCTTTTCCCTCCTCCTTG 814607 Query 63235 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCATTGGATG 63293 ||||| |||||||| || | ||| | ||||| | ||| || | |||| || |||||| Sbjct 814606 ATCTACATATCTAGCAGTATCATTGAATACTCTTAGCATAGGTACTAAT-CCGTTGGATA 814548 Query 63294 TACCATTGGTCCCTGAGATAT---AGCTTCCACTGGCACGAATATTACTAATTGATAGAC 63350 | ||||| || ||| |||| | || || | | |||| | || | | Sbjct 814547 TTCCATTCGTTCCTCTAATATATGAATTTTGAC---CTCTTATATCTTGCACTGCAACTC 814491 Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 63410 | || || || || |||| |||||||| ||| |||| || || || | || || | Sbjct 814490 CAATACCACCAGCTGTTTTGCTAATTAATGCACATTGTTTCAATGTTTCGAAAATTCCTT 814431 Query 63411 CTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63469 |||| ||| ||| || ||| || |||||| ||||||||| | | |||| Sbjct 814430 CTATCGAATCTGATTTCATTGATAA-TAAAAAACACGAAGACATTTGTGGTCTTGGAGTT 814372 Query 63470 CCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTAC 63529 || | ||| ||||| ||||||| || || || || |||| | || | || | || Sbjct 814371 CCAGAATTGAATAATGTAGGAGTTGCATGTGTGAAATATTTCTGTGACATTAAGTGATAT 814312 Query 63530 GTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACAT 63588 || |||| ||| || | ||| || | ||| ||||| | | || | |||||||| Sbjct 814311 GTTTCAAGTGCTTTTTCCAAATCGTCAAT-ATGGATTCCAATAGATACTCTCATTAACAA 814253 Query 63589 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63648 || || |||||||||| || || || || | || || || ||| || || Sbjct 814252 ATGTTGTGGTCTTTCAATAATTTTCCCATTAATGCGTAGTAAATATGACCGTTCTAATGT 814193 Query 63649 TTTAAAACCAAAATA 63663 ||||||||||| || Sbjct 814192 CTTAAAACCAAAGTA 814178 Score = 188 bits (208), Expect = 9e-43 Identities = 375/547 (69%), Gaps = 10/547 (2%) Strand=Plus/Minus Query 32667 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 32726 ||||| |||||| || || |||| |||||| ||||| || || || | ||| | Sbjct 2310272 AAATCTGTGTGTAGTCCTTCATCTCGACTAATCAATTCATTACTGAATGTCAATCCATGT 2310213 Query 32727 A--TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATT 32783 | ||| ||||||||| ||||||||| | | || || |||| ||| |||||| Sbjct 2310212 AACTTATTTT--GCTTTTTAAACCAAAATATTG-CACAGAAACTTCCACTAAATAAAATT 2310156 Query 32784 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCAC 32843 |||||||| ||| || | | || ||| || | | |||| |||||| Sbjct 2310155 CCTTCTACGCATGCATTTGCCACTATCCTTTCTGCAAAGGAATTAGTATCATTTATCCAT 2310096 Query 32844 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 32903 || ||||| || || ||||||||| || || | |||||||||| ||| | | Sbjct 2310095 TTGGCTGCCCATAATGCTTTATTTTTTACAGCTGGTATATTTTCTATAGCATGAAATAAA 2310036 Query 32904 TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 32963 | | |||| || ||| || | || ||||||| || | ||| || |||| ||| Sbjct 2310035 TTCAATCTTTCTTTTTCATCCTTTATGTAATTATCAATTAATAAACTGTATGTTTCGGAA 2309976 Query 32964 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACT 33023 || || ||||||| || |||||||| || || | | ||||| ||||| || ||| Sbjct 2309975 TGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCCTCTGTAATTTGAACT 2309916 Query 33024 TCT-GTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 33081 | | ||| ||| | | || ||||||||||| || ||||| ||||| |||||||||| Sbjct 2309915 TGTCGTAAAAACT--TACTAGCTAAATTTTCCAAAACAATTCCATCACTTGCTGCAAAAA 2309858 Query 33082 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 33141 | || || |||||||||||||||| ||||| | ||| ||| | |||| || | Sbjct 2309857 ATGCTAAAACATGTTTTATAAAATGCTTTTCATTATCATTTAATTTTTCGAAATCTTTTA 2309798 Query 33142 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 33201 ||| | |||| ||| | ||| ||| |||||||||||||||| ||||| |||||||| | Sbjct 2309797 AATCACTCGATAAATCTATTTCCTCCGCTGTCCAAAATGATGCTTCTGCTTTTTTATAAA 2309738 Query 33202 TATTCCA 33208 || ||| Sbjct 2309737 AATCCCA 2309731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633626115142800