Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq13 145 7e-30 seq11 125 6e-24 >seq13 Length=2538962 Score = 145 bits (160), Expect = 7e-30 Identities = 172/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||||||||| || || ||| |||||||| | || || ||||| || Sbjct 758952 ATGCAAATTTTTGTAAAGACTTTAACAGGAAAAACCATCACACTAGACGTTGAGTCATCA 759011 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| | || |||| || || |||||||| ||||||||||| Sbjct 759012 GACACAATTGAAAACGTCA---AGGCTAAAATACA-AGATAAAGAAGGAATTCCACCTGA 759067 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || | | || ||||| || |||||||||||||||| | || | ||||| Sbjct 759068 CCAGCAAAGATTAATATTTGCAGGAAAACAATTAGAAGATGGAAGAACATTATCAGATTA 759127 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| ||||| ||||| || |||||||||| || | ||||||| || Sbjct 759128 TAATATCCAAAAGGAATCTACTTTACATTTAGTTCTCCGTTTAAGAGGTGG 759178 Score = 105 bits (116), Expect = 6e-18 Identities = 147/204 (72%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 25026 GGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGA----GTCACTGAAGCA 25081 || ||| |||||||| | || || ||||| || || || || || |||| | || Sbjct 758751 GGAAAAACCATCACACTGGACGTTGAGTCATCAGATACAATTGAAAACGTCA---AGGCT 758807 Query 25082 AAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAA 25141 |||| || || |||||||| |||||||||||||| || | | || ||||| || || Sbjct 758808 AAAATACAA-GATAAAGAAGGAATTCCACCTGACCAGCAAAGATTAATATTTGCAGGAAA 758866 Query 25142 ACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 |||||||||||||| | || | ||||| ||||| ||||| ||||| || |||| Sbjct 758867 ACAATTAGAAGATGGAAGAACATTATCAGATTATAATATCCAAAAGGAATCAACTTTACA 758926 Query 25202 TTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || | ||||||| || Sbjct 758927 TTTAGTTCTCCGTTTAAGAGGTGG 758950 >seq11 Length=2227116 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||||||||| ||||| || || ||||| ||| ||||||| | || || ||||| || Sbjct 206464 AATGCAAATATTCGTAAAAACATTAACCGGAAAAACCATCACCCTTGATGTCGAGTCATC 206523 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| || || ||| | || ||||||| ||| || || ||||| |||||||| || | Sbjct 206524 TGATACGATTGAGAATGTTAAGGCAAAAATTCA-AGATAAGGAAGGAATTCCACCCGATC 206582 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| | | || ||||| || |||||| ||||||||| | || | | || || | Sbjct 206583 AACAGAGATTAATATTTGCAGGAAAACAACTAGAAGATGGCAGAACATTAGCTGACTATA 206642 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGT 25207 | ||||| || || ||||| ||||||| || Sbjct 206643 ACATTCAGAAGGAGTCCACTTTACATTTGGT 206673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433324076079545