Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq13 206 3e-48 >seq13 Length=2538962 Score = 206 bits (228), Expect = 3e-48 Identities = 581/878 (66%), Gaps = 27/878 (3%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||| || || |||| || || || ||||| |||||||| |||||||| ||||||| Sbjct 2310582 CATGACTCCCGATTTCTGATAATCTGCAACTCGCTTTTCAAAAAAATTTGTTTTTCCTTG 2310523 Query 92850 CAAAGATATCGAATTCA-CTAGT-GATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 | ||||| || || | ||| || ||||||||| | | || |||| || Sbjct 2310522 TAGGGATATGAGATCCATCCAGTTGAATGGATTCTTTGAATGGAAAA--TTTTGGAAGAC 2310465 Query 92908 C--AACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAA 92965 | || | || ||||| |||||| |||||||| || ||||||||||| || | || Sbjct 2310464 CCCAAACATTCCAGTAATCGATCAGCGACAAATTCGATATACTGAGACATTAATCTAGAA 2310405 Query 92966 TTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAA--ATCTTTCTCGATTACAA 93023 ||||| || | | | ||| | || ||| | || |||||||| | | | | Sbjct 2310404 TTCATCCCAATTAAATCACAAGGCAAAGATTCGCATATAAATGATCTTTCT--ACTTCTA 2310347 Query 93024 CGGCTTCTTTCAAGAT-TTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTG 93082 | || ||||| | ||| |||| || || | |||| ||| | | | | || | Sbjct 2310346 CTGCCTCTTTAACGATATTCTGCACAACTTCT-TCTGGTAATTTATTTTCTAATAAACTA 2310288 Query 93083 TACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTG 93142 || ||||| || ||| || || |||| ||||| ||||| ||||| ||||| ||| Sbjct 2310287 TAAATTAAACAGTTAAAATCTGTGTGTAGTCCTTCATCTCGACTAATCAATTCATTACTG 2310228 Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 ||||| || || ||||| | | || || | ||||||||||| | ||||| ||| Sbjct 2310227 AATGTCAATCCATGTAACTTATTTTGCTTTTTAAACCAAAATATTGCACAGAAACTTCCA 2310168 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA 93262 ||| || || ||||| ||| |||| |||||| || | ||| ||||| |||| Sbjct 2310167 CTAAATAAAATTCCTTCTACGCATGCATTTGCCACTATCCTTTCTGCAAA------GGAA 2310114 Query 93263 TTACTGC---TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT 93319 ||| | | |||||||| ||||| ||||| || || | | |||| || Sbjct 2310113 TTAGTATCATTTATCCATTTGGCTGCCCATAATGCTTTATTTTTTACAGCTGGTATATTT 2310054 Query 93320 TCGATAGCGTTAAATAGGT--AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTA 93377 || ||||| | ||||| | ||||| || | | ||| |||||| |||| |||| Sbjct 2310053 TCTATAGCATGAAATAAATTCAATCTTTCTTTTTC--ATCCTTTATGTAATTATCAATTA 2309996 Query 93378 ACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATC 93437 | | | || |||| ||||| | ||| || | || ||||| || || || | Sbjct 2309995 ATAAACTGTATGTTTCGGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTT 2309936 Query 93438 TAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTA-CGAGATTTTCATTGACTATA 93496 | || || || || || |||| | | |||| || ||| | | |||||| || || Sbjct 2309935 TTGCCTCTGTAATTTGAACTTGTCGTAAAAA-CTTACTAGCTAAATTTTCCAAAACAATT 2309877 Query 93497 CCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTA 93556 ||||| |||||||||||| || || | ||| ||||||||||| || |||| ||| || Sbjct 2309876 CCATCACTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGCTTTTCATTATCATTT 2309817 Query 93557 AGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGAT 93616 | || || |||| || ||| | || | ||| | ||| || | |||||||| ||| Sbjct 2309816 AATTTTTCGAAATCTTTTAAATCACTCGATAAATCTATTTCCTCCGCTGTCCAAAATGAT 2309757 Query 93617 GCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATA 93654 |||||||||||||| || | |||||| | ||| |||| Sbjct 2309756 GCTTCTGCTTTTTTATAAAAATCCCACACATCTGGATA 2309719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556855628155320