Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq11 104 2e-17 seq13 95.1 1e-14 >seq11 Length=2227116 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || |||||||| || || || | || | | ||||| || || || || Sbjct 206661 GTGGACTCCTTCTGAATGTTATAGTCAGCTAATGTTCTGCCATCTTCTAGTTGTTTTCCT 206602 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | | ||| || ||||| ||||||||||| || ||||| |||||| ||| Sbjct 206601 GCAAATATTAATCTCTGTTGATCGGGTGGAATTCCTTCCTTATCTTGAATTTTTGCCTTA 206542 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | |||||| | || || || | || | ||| || ||||| || ||| Sbjct 206541 ACATTCTCAATCGTATCAGATGACTCGACATCAAGGGTGATGGTTTTTCCGGTTAATGTT 206482 Query 64427 TTTACGAAAATTTGCATTTT 64446 |||||||| ||||||||||| Sbjct 206481 TTTACGAATATTTGCATTTT 206462 >seq13 Length=2538962 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || |||| ||| | || ||||| ||||| || || ||||||| | || | | ||| Sbjct 759163 AGAACTAAATGTAAAGTAGATTCCTTTTGGATATTATAATCTGATAATGTTCTTCCATCT 759104 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || || ||| | || | | |||||||| || |||||||||||||| ||| Sbjct 759103 TCTAATTGTTTTCCTGCAAATATTAATCTTTGCTGGTCAGGTGGAATTCCTTCTTTATCT 759044 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 |||||||| ||| || || | ||| || | || || |||| || | ||| Sbjct 759043 TGTATTTTAGCCTTGACGTTTTCAATTGTGTCTGATGACTCAACGTCTAGTGTGATGGTT 758984 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || ||||| ||||| ||||||||||| Sbjct 758983 TTTCCTGTTAAAGTCTTTACAAAAATTTGCAT 758952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499640159548920