Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq13 116 3e-21 seq11 95.1 9e-15 >seq13 Length=2538962 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | ||||||||| | ||||| || ||||| || || ||||| || Sbjct 759178 CCACCTCTTAAACGGAGAACTAAATGTAAAGTAGATTCCTTTTGGATATTATAATC--TG 759121 Query 15010 AGAAT--TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| | |||||||||||||| || || |||| || | || ||||| || Sbjct 759120 ATAATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGCTGGTCAGGTG 759061 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||||||||| || || ||||| || || |||| || || || || | Sbjct 759060 GAATTCCTTCTTTATCTTGTATTTTAGCCTTGACGTTTTCAATTGTGTCTGATGACTCAA 759001 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||||| || |||||||| ||||| | ||| |||||||||||||||||| Sbjct 759000 CGTCTAGTGTGATGGTTTTTCCTGTTAAAGTCTTTACAAAAATTTGCATA 758951 >seq11 Length=2227116 Score = 95.1 bits (104), Expect = 9e-15 Identities = 155/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTC 15026 || ||||| | || || || || || ||||| || || ||| | |||| | ||||| Sbjct 206673 ACCAAATGTAAAGTGGACTCCTTCTGAATGTTATAGTCAGCTAATG-TTCTGCCATCTTC 206615 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 || |||||| || || |||| || | |||||| ||| ||||||||||||||| || Sbjct 206614 TAGTTGTTTTCCTGCAAATATTAATCTCTGTTGATCGGGTGGAATTCCTTCCTTATCTTG 206555 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| || ||| | || || ||||| || || || | ||| |||||||| Sbjct 206554 AATTTTTGCCTTAACATTCTCAATCGTATCAGATGACTCGACATCAAGGGTGATGGTTTT 206495 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAA 15187 || || | |||||||| || |||||||| || | || || Sbjct 206494 TCCGGTTAATGTTTTTACGAATATTTGCATTTTGGTAAAAA 206454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357388763703755