Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq13 156 4e-33 seq11 107 2e-18 >seq13 Length=2538962 Score = 156 bits (172), Expect = 4e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| ||| | || ||||||||||||||||||||||| | ||| | ||| || Sbjct 759160 ACTAAATGTAAAGTAGATTCCTTTTGGATATTATAATCTGATAATGTTCTTCCATCTTCT 759101 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 |||||||||||||| |||| |||| ||||||||| || ||||| |||||||||||||| Sbjct 759100 AATTGTTTTCCTGCAAATATTAATCTTTGCTGGTCAGGTGGAATTCCTTCTTTATCTTGT 759041 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| |||| ||| | ||||| || ||||| || || || || | ||||| Sbjct 759040 ATTTTAGCCTTGACGTTTTCAATTGTGTCTGATGACTCAACGTCTAGTGTGATGGTTTTT 758981 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||| ||| ||||||||||||||||| Sbjct 758980 CCTGTTAAAGTCTTTACAAAAATTTGCAT 758952 Score = 122 bits (134), Expect = 8e-23 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| ||| | |||||||||||||||||||||||||| | ||| | ||| || Sbjct 758932 ACTAAATGTAAAGTTGATTCCTTTTGGATATTATAATCTGATAATGTTCTTCCATCTTCT 758873 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 |||||||||||||| |||| |||| ||||||||| || ||||| |||||||||||||| Sbjct 758872 AATTGTTTTCCTGCAAATATTAATCTTTGCTGGTCAGGTGGAATTCCTTCTTTATCTTGT 758813 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| |||| ||| | || || || ||||| || || || || | ||||| Sbjct 758812 ATTTTAGCCTTGACGTTTTCAATTGTATCTGATGACTCAACGTCCAGTGTGATGGTTTTT 758753 Query 45312 CC 45313 || Sbjct 758752 CC 758751 >seq11 Length=2227116 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 45144 GTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGTCCAATTGTTTTCC 45202 || || ||||| || || ||||| || ||| | | || | ||| || | ||||||||| Sbjct 206661 GTGGACTCCTTCTGAATGTTATAGTCAGCTAATG-TTCTGCCATCTTCTAGTTGTTTTCC 206603 Query 45203 TGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 45262 ||| |||| |||| || || || || ||||| ||||| ||||||||||||||| || Sbjct 206602 TGCAAATATTAATCTCTGTTGATCGGGTGGAATTCCTTCCTTATCTTGAATTTTTGCCTT 206543 Query 45263 GATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGT 45322 | || | || || || |||||||| || || || | ||||| ||||||| || Sbjct 206542 AACATTCTCAATCGTATCAGATGACTCGACATCAAGGGTGATGGTTTTTCCGGTTAATGT 206483 Query 45323 TTTTACAAAAATTTGCAT 45340 |||||| || |||||||| Sbjct 206482 TTTTACGAATATTTGCAT 206465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451999002020280