Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq13 141 1e-28 >seq13 Length=2538962 Score = 141 bits (156), Expect = 1e-28 Identities = 616/964 (64%), Gaps = 9/964 (1%) Strand=Plus/Minus Query 110261 TCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGT 110320 |||| ||| ||| ||||| | || ||||| || ||||| || |||| | || | Sbjct 815120 TCTCTGTATCTACAAATTTGCATAATGCTATAGATGCCAGATTACATACAGCAACTTCAT 815061 Query 110321 CTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGT 110380 | |||||||| | ||| || ||| ||||| || || || || || | Sbjct 815060 CAGGAGATGTGTATTCAATAATCTCACAACATAAGTTACTACATTTTATAGTTCCTAAAT 815001 Query 110381 TCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTT 110440 | |||||||||||||| || || || | ||| ||||| |||||||| ||| ||| |||| Sbjct 815000 TTTTCTGATTCGATTTAGAATTACACGAATCTTTATAAAGCATGTAAGGGACACCTGTTT 814941 Query 110441 CCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGA 110500 | |||| || | || || ||||| ||| || ||| ||| || | | Sbjct 814940 CTATCTGGCTCTGTAATATAGCAAACCATAAATCTTGTGCTAAGACTGTTTTTTTCCCCA 814881 Query 110501 GACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAA 110560 ||| ||||| || || || || || | |||||||| | || | || | Sbjct 814880 TGTTTTCTTCCTCATATTTTGTATATAACTTTTCAAATTCTTCACCCCATGTTTCGCTTA 814821 Query 110561 GACCCTTCGC-CTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTC 110619 ||||| | || | ||||| | | | ||||||| | || | ||| || ||| Sbjct 814820 -ACCCTGGACACTCATTTGGACACATTAAAGTCCAATTTTTATTTTCTTTAACTCTTTTC 814762 Query 110620 ATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCA 110679 || || || || |||| ||||| || ||||||| || || | ||||| | Sbjct 814761 ATAAAAAGATCTGGAACCCACACAGCATAGAAAAGATCTCGAGCTCTTAATTCTTCTTTT 814702 Query 110680 CCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAG 110739 || || || | || || ||||| || | || || || ||||||||||| | || Sbjct 814701 CCATGATTTTTTCTTAAATCTAAAAATTCAAAAATGTCAGAATGCCATGGTTCAATGTAT 814642 Query 110740 ACAGCGATGGATCCCTTACGACGACC--CGCCTGGTTA-ACATAGCGTGCTGTGGCATTG 110796 ||||| | ||||| || | || | ||| | | ||||| | || || ||||| Sbjct 814641 ACAGCAAAAGATCCTTTTCTTTTCCCTCCTCCTTGATCTACATATCTAGCAGTATCATTG 814582 Query 110797 AAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGAC 110856 || || || |||||||| | | ||| | |||| ||||| || || ||||| || Sbjct 814581 AATACTCTTAGCATAGGTACTAATCCGTTGGATATTCCATTCGTTCCTCTAATATATGAA 814522 Query 110857 TTATTGGCACGAATGTCGTGGATATGCATA-CCAATACCACCCGCCCACTTACTAATTTG 110915 || | | | || || || | |||| ||||||||||| || || |||||| Sbjct 814521 TTTTGACCTCTTATATCTTGCAC-TGCAACTCCAATACCACCAGCTGTTTTGCTAATTAA 814463 Query 110916 TGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAG 110975 |||||| | | | | ||| | |||| || || |||||||||| || | | | || Sbjct 814462 TGCACATTGTTTCAATGTTTCGAAAATTCCTTCTATCGAATCTGATTTCATTGATAATAA 814403 Query 110976 AAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATG 111035 ||| || |||||||| || || | || ||||| | |||||| | |||||| || ||||| Sbjct 814402 AAAACACGAAGACATTTGTGGTCTTGGAGTTCCAGAATTGAATAATGTAGGAGTTGCATG 814343 Query 111036 AATGAACAGACCT-TGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTAC 111094 |||| | | | || ||||| || ||||| || ||||| | ||| | | Sbjct 814342 TGTGAA-ATATTTCTGTGACATTAAGTGATATGTTTCAAGTGCTTTTTCCAAATCGTCAA 814284 Query 111095 CGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCAT 111154 || || ||||| | |||| ||| |||| || ||| || |||| || | || |||| Sbjct 814283 TATGGATTCCAATAGATACTCTCATTAACAAATGTTGTGGTCTTTCAATAATTTTCCCAT 814224 Query 111155 CAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAAT 111214 || || | | || | |||| ||||| | ||||||||| || ||| ||||| Sbjct 814223 TAATGCGTAGTAAATATGACCGTTCTAATGTCTTAAAACCAAAGTAATCATAATTGAAAT 814164 Query 111215 CACG 111218 |||| Sbjct 814163 CACG 814160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588970529885400