Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq4 109 7e-19 seq13 89.7 7e-13 >seq4 Length=941946 Score = 109 bits (120), Expect = 7e-19 Identities = 148/202 (73%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 126907 TGTATTGTGGTTTTACTGGAAGAAGGATAAAGAGTAAAATTTTTATAGGTCCAACATACT 126966 ||||| |||| || ||| | || | |||| ||||| |||||||| |||||||| | Sbjct 270882 TGTATAATGGTCATAATGGGAAAATGTTAAAATCAAAAATATTTATAGGGCCAACATATT 270823 Query 126967 ATCATCGTCTTAAACATATGGTTAAAGATAAAATGCATGCTAGAAGTCATGGTCAAGTAA 127026 |||| | | ||||||||||| |||| ||||| ||||| |||||| |||| | ||| Sbjct 270822 ATCAAAGATTAAAACATATGGTGGAAGACAAAATACATGCAAGAAGTAGAGGTCCATTAA 270763 Query 127027 C-AACATTACATCGTCAACCAAACTGTGGTCGTTCCCAAGG--TGGTGGATTAAGATTTG 127083 | | ||||| || ||||||| || | | ||||| ||| || | ||||||| Sbjct 270762 CTATGATTAC-GCGACAACCAACAGAAGGAAGAT--CAAGGGATGGGGGTCTTAGATTTG 270706 Query 127084 GAGAAATGGAAAAAGATTGTAT 127105 |||||||||||| ||||||||| Sbjct 270705 GAGAAATGGAAAGAGATTGTAT 270684 Score = 86.0 bits (94), Expect = 8e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 126170 TGGTATTAATGCAATTGTAGCAATCGCGTGTTACACTGGATACAATCAAGAAGATAGTGT 126229 |||||| ||||| ||||| ||||| ||||||||| ||||| ||||||||||||||| | Sbjct 272063 TGGTATAAATGCCATTGTTGCAATTATGTGTTACACAGGATATAATCAAGAAGATAGTCT 272004 Query 126230 TATTCTTAATAAAGCATCTATCGAAAGAGGTTTATTT 126266 ||| | ||| | | ||||| || |||||| | ||| Sbjct 272003 TATAATGAATCAGTCTTCTATTGATAGAGGTCTCTTT 271967 >seq13 Length=2538962 Score = 89.7 bits (98), Expect = 7e-13 Identities = 143/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 98698 TAAAGTTGCCCAGTTGAGTGGTTACATTGCGGAACAAACTGATTATAAACACGGTGAACA 98757 ||||||||| ||| | ||||||||| ||||| || | || ||| | || || ||| Sbjct 1010857 TAAAGTTGCACAGCTTGTTGGTTACATAGCGGAGCATAGTGCATATCATCATGGAGAATC 1010916 Query 98758 AAACCTTTGTGAAACAATAATAAAATTTGCACAAGATTTTGTGGGTACAAATAATATAAC 98817 | || |||| || || || | || || |||||| || | |||||||||| Sbjct 1010917 ATCTCTACAACAAACTATTATTAACATGGCGCAGACTTTTGTTGGGTCTAATAATATAA- 1010975 Query 98818 ACTACTT-GAGCCAGATGGTCAGTTTGGTACCAGACTTGAAGGAGGTAAAGATTCGGCTG 98876 ||| || || ||| ||| || ||||||| |||| || ||||| |||||| | ||| Sbjct 1010976 ACTTTTTAGAACCATGTGGGCAATTTGGTAGCAGAAAAGAGGGAGGAAAAGATGCATCTG 1011035 Query 98877 CATCAAGGTATATTTATACCAAA 98899 || |||||||||||| ||| ||| Sbjct 1011036 CAGCAAGGTATATTTTTACAAAA 1011058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658397085080280