Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq13 441 8e-119 >seq13 Length=2538962 Score = 441 bits (488), Expect = 8e-119 Identities = 1015/1521 (67%), Gaps = 45/1521 (3%) Strand=Plus/Minus Query 47303 TTTTAAAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATAT 47362 ||||| ||||| |||||||| | |||||||||| || || | | | || || Sbjct 815680 TTTTAGCAGATGTGGATTAACTACGAAAAATTCTCCACTCAGAACACGTCTGTAGTAGAT 815621 Query 47363 ATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGT 47422 ||||| ||||||||||| | |||||||||||||| | |||||| | ||| ||||| || Sbjct 815620 GTTACTAGTATATGGTTCAAAGGATTCATTATTTCCCAGAATTTGCGAAGTAGATGCAGT 815561 Query 47423 AGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNN 47482 ||||| | || | | ||| ||| || | ||||| ||| | ||| | Sbjct 815560 TGGCATTGGAGCCAGAAGTAATGAATTCCTCAATCCATGTTTCTTTATTTTAGTCTTTAG 815501 Query 47483 NNGTTTCCAATCCCAA-AGATCTGATGGAACA--ACATTCCAAAAATCATATTGAAGAAT 47539 | ||||| |||| | | | || | | |||||||| | ||| |||| | ||| Sbjct 815500 TTCATCCCAATTCCAATATTTATTATCAACCTTTACATTCCACATGTCAAATTGTAAAAT 815441 Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599 ||||| ||| ||| ||| | |||||||| |||||| || || | || ||| | ||| Sbjct 815440 TCCTTGACTAGCTGGACTACCCTGATATGTTTCATAAGGTCCATACACTTGAGCCAATTC 815381 Query 47600 -ACA-ACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTC 47657 | | || | |||||| ||| |||||| || |||||||| ||| || | |||| |||| Sbjct 815380 CATAGACAT--TTCCAAAGCAGCATAATACATAGTTTCAAAAATTCTTTTATTTA-ATTC 815324 Query 47658 CTT-GCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTG 47716 || || ||||||| | ||||| || ||||| ||||||||||| Sbjct 815323 TTTAGCAGAATCTGATTCATAGGGATATCTTAATAACATAAAAGTATCAGCCAATCCTTG 815264 Query 47717 AACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATA 47776 ||| || || || ||||||||||| || |||| || ||||||| | ||| || Sbjct 815263 AACCCCTATTCCTATTGGTCTATGTCTTGTATTGGATCTTCTAGCTTCTTCAACTGGGTA 815204 Query 47777 TTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAA 47836 | ||| | ||||||||||||| | | ||||| | Sbjct 815203 ATAATTTCTTTCTATAATTTTATCCAAATTTCGTGTAATAATTTTTGTAATTTGGTAAAG 815144 Query 47837 TTTATTAAAATCAAACTTGTTATT-----TATA-ACAAACCTATTAAGTGCTATAGATGC 47890 ||| ||||||| ||| | || || ||| ||||| | | |||||||||||| Sbjct 815143 TTTCTTAAAATTAAATTCTTTTTTCTCTGTATCTACAAATTTGCATAATGCTATAGATGC 815084 Query 47891 TAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATT 47950 |||||||||||||| || |||| ||| || |||| || || ||| ||||| || Sbjct 815083 CAGATTACATACAGCAACTTCATCAGGAGATGTGTATTCAATAATCTCACAACATAAGTT 815024 Query 47951 ACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTACATGCGTCCTTG 48008 || |||||| ||||| || ||||||| ||||| ||| | |||| | || || Sbjct 815023 ACTACATTTTATAGTTCCTAAATTTTTCTGATTCGATTTAGAAT--TACACGAATCTTTA 814966 Query 48009 TAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACA--- 48065 |||||||| |||| || ||||||||||| | | |||| ||| | | Sbjct 814965 TAAAGCATGTAAGGGACACCTGTTTCTATCTGGCTCTGTAATATAGCAAACCATAAATCT 814906 Query 48066 -GTCCTA-GCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACT 48123 || ||| | || | | | | | | || || | || ||||| |||||||||| Sbjct 814905 TGTGCTAAGACTGTTTT-----TTTCCCCATGTTTTCTTCCTCATATTTTGTATATAACT 814851 Query 48124 TCTCAAATTCATCCCCATACACATTATC---TAACCCAGGACATTCATTAGGACACATCA 48180 | |||||||| || || || || || |||||| ||||| ||||| |||||||| | Sbjct 814850 TTTCAAATTCTTCACCC--CATGTT-TCGCTTAACCCTGGACACTCATTTGGACACATTA 814794 Query 48181 ATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTA 48240 | | ||||| | || | ||| ||||| ||||||| | |||||| | ||| | ||| | Sbjct 814793 AAGTCCAATTTTTATTTTCTTTAACTCTTTTCATAAAAAGATCTGGAACCCACACAGC-A 814735 Query 48241 TAAATAA-ATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAG 48299 || | || ||| | || ||||| |||||| || ||| ||| || | | || | ||| Sbjct 814734 TAGAAAAGATCTCGAGCTCTTAATTCTTCTTTTCCATGATTTTTTCTTAAATCTAAAAAT 814675 Query 48300 TCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTA 48359 || | || |||| |||||||||||| | |||| || | ||| || ||| Sbjct 814674 TCAAAAATGTCAGAATGCCATGGTTCAATGTATACAGCAAAAGATCCTTTTCTTTTCCCT 814615 Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||||| |||||| ||||||| || | ||||||| ||| || || | || Sbjct 814614 CCTCCTTGATCTACATATCTAGCAGTATCATTGAATACTCTTAGCATAGGTACTAATCCG 814555 Query 48420 TTTGATATACCATTGGTTCCCGAAATATA---ACTTCCACTAGCTCTTATATTACTAATT 48476 || ||||| ||||| ||||| |||||| | || || ||||||||| | | Sbjct 814554 TTGGATATTCCATTCGTTCCTCTAATATATGAATTTTGAC---CTCTTATATCTTGCACT 814498 Query 48477 GAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAA 48536 | || || |||||||| || |||| |||| ||||| |||| | || || || Sbjct 814497 GCAACTCCAATACCACCAGCTGTTTTGCTAATTAATGCACATTGTTTCAATGTTTCGAAA 814438 Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596 ||||||||||| ||| | |||| ||||| |||||| ||||||||| || Sbjct 814437 ATTCCTTCTATCGAATCTGATTTCATTGATAATAAAAAACACGAAGACATTTGTGGTCTT 814378 Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656 |||||| ||||| |||||||| |||| |||||| | || |||||| ||| | || Sbjct 814377 GGAGTTCCAGAATTGAATAATGTAGGAGTTGCATGTGTGAAATATTTCTGTGACATTAAG 814318 Query 48657 TTATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCAT 48715 | ||||||||||| | || | ||| || | ||| || || |||||||| | ||| Sbjct 814317 TGATATGTTTCAAGTGCTTTTTCCAAATCGTCAAT-ATGGATTCCAATAGATACTCTCAT 814259 Query 48716 TAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTC 48775 ||||| || ||| |||||||||| |||||| ||| || | | |||||| ||| Sbjct 814258 TAACAAATGTTGTGGTCTTTCAATAATTTTCCCATTAATGCGTAGTAAATATGACCGTTC 814199 Query 48776 CAATGTTTTAAAACCAAAATA 48796 ||||| ||||||||||| || Sbjct 814198 TAATGTCTTAAAACCAAAGTA 814178 Score = 275 bits (304), Expect = 7e-69 Identities = 597/879 (68%), Gaps = 27/879 (3%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| |||||| ||| ||||| || ||||||| |||||||| ||||| |||||||| | Sbjct 2310582 CATGACTCCCGATTTCTGATAATCTGCAACTCGCTTTTCAAAAAAATTTGTTTTTCCTTG 2310523 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776 || ||||| ||||| | | |||||||| ||| || | ||||| | || Sbjct 2310522 TAGGGATATGAGATCCATCCAGTTGAATGGATTCTTTGAATGGAAAATTTTGGAAGACCC 2310463 Query 18777 TAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATC-ACAA 18834 || | |||| || ||| || ||||||| ||||| || | ||| | ||| | || Sbjct 2310462 CAAACATTCCAGTAATCGATCAGCGACAAATTCGATATACTGAGA-CATTA-ATCTAGAA 2310405 Query 18835 TTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACT 18894 ||||| || ||||| | | ||| | | || | |||| | ||||| | |||| Sbjct 2310404 TTCATCCCAATTAAATCACAAGGCAAAGATTCGCATATAAATGATCTTTCTACTTCTACT 2310345 Query 18895 GCCTCT-----GATATAATAGATACAACTCTATCT--TCATTAGGAGGGTATAGAAGATG 18947 |||||| ||||| | | ||||| ||| | ||| | | || | | Sbjct 2310344 GCCTCTTTAACGATATTCTGCA--CAACTTCTTCTGGTAATTT--ATTTTCTAATAAAC- 2310290 Query 18948 TTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATT 19007 || | || ||||| |||||| |||||||| || |||| ||| ||||||||||| Sbjct 2310289 --TATAAATTAAACAGTTAAAATCTGTGTGTAGTCCTTCATCTCGACTAATCAATTCATT 2310232 Query 19008 AGAAAATGTTAAACCAGGCATCAGTCCTCtt--ttttttAACCAGAATATAGAAGCAAAT 19065 | ||||| || ||| | | | | | || ||||| ||||| ||||| | | || Sbjct 2310231 ACTGAATGTCAATCCATGTAAC--TTATTTTGCTTTTTAAACCAAAATATTGCACAGAAA 2310174 Query 19066 GATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA 19125 |||| ||| || || |||||||| |||| || |||| |||||| || | Sbjct 2310173 CTTCCACTAAATAAAATTCCTTCTACGCATGCATTTGCCACTATCCTTTCTGCAAAG--- 2310117 Query 19126 GCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATT 19185 | || | ||| || |||||||| |||||| || || ||||||||| ||| || Sbjct 2310116 GAATTAGTATCATTTATCCATTTGGCTGCCCATAATGCTTTATTTTTTACAGCTGGTATA 2310057 Query 19186 GTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATC 19245 | ||||||| || ||||| || || | || | | ||| || | || ||| || Sbjct 2310056 TTTTCTATAGCATGAAATAAATTCAATCTTTCTTTTTCATCCTTTATGTAATTATCAATT 2309997 Query 19246 AATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACAT 19305 ||||||||||| |||| ||||| |||||||| | ||| || ||||| ||||| | Sbjct 2309996 AATAAACTGTATGTTTCGGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTT 2309937 Query 19306 CTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACC-AAATTTTCATTAACTAT 19364 |||| ||||| || || |||| | |||| ||| | | | |||||||| ||| || Sbjct 2309936 TTTGCCTCTGTAATTTGAACTTGTCGTAAAAA-CTTACTAGCTAAATTTTCCAAAACAAT 2309878 Query 19365 TCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGT 19424 ||||||||| ||||||||||||||||| |||||||| |||||||| ||||||| | Sbjct 2309877 TCCATCACTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGCTTTTCATTATCATT 2309818 Query 19425 TAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGA 19484 |||| | | |||| || | ||| | |||||||||| ||| || |||||||||| || Sbjct 2309817 TAATTTTTCGAAATCTTTTAAATCACTCGATAAATCTATTTCCTCCGCTGTCCAAAATGA 2309758 Query 19485 AGCCTCTGCTTTTTTATACATGTTCCATATATCACGATA 19523 || |||||||||||||| | | ||| | ||| |||| Sbjct 2309757 TGCTTCTGCTTTTTTATAAAAATCCCACACATCTGGATA 2309719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562103579414520