Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq13 250 3e-61 >seq13 Length=2538962 Score = 250 bits (276), Expect = 3e-61 Identities = 563/837 (67%), Gaps = 27/837 (3%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| |||||| ||| ||||| ||| ||||||| |||| ||||||||||| ||||||| Sbjct 2310582 CATGACTCCCGATTTCTGATAATCTGCAACTCGCTTTTCAAAAAAATTTGTTTTTCCTTG 2310523 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATT--ATATATAGTACTACAT 36989 ||| ||||| ||||| | | |||||||| || || | || | | | || Sbjct 2310522 TAGGGATATGAGATCCATCCAGTTGAATGGATTCTTTGAATGGAAAATTTTGGAAGACCC 2310463 Query 36990 GATA-ATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATA 37048 | | ||||| || | | ||| || |||||||| || || | | |||||| | | | Sbjct 2310462 CAAACATTCC---AGTAATCGATCAGCGACAAATTCGATATACTGAGACATTAATCTAGA 2310406 Query 37049 GTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTAC 37108 || || ||||||| | || | | || | |||| | |||||| | ||| Sbjct 2310405 ATTCATCCCAATTAAATCACAAGGCAAAGATTCGCATATAAATGATCTTTCTACTTCTAC 2310346 Query 37109 AGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAA 37168 || |||||||| ||||| | ||||||||| | | || || ||| | || | Sbjct 2310345 TGCCTCTTTAACGATATTCTGCACAACTTCTTCTGGTAATTTATTTTCTAATAAACTATA 2310286 Query 37169 CAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAA 37228 | |||||| |||||| |||| |||||||||| ||| |||||||||||| || Sbjct 2310285 AATTAAACAGTTAAAATCTGTGTGTAGTCCTTCATCTCGACTAATCAATTCATTACTGAA 2310226 Query 37229 GGTTAATCCTGGCATTAAACCTCtttt----tttAATCCAAAATATTGCTGCAAAAGATC 37284 || ||||| || ||| | |||| ||||| |||||||||||| ||| || Sbjct 2310225 TGTCAATCC----ATGTAACTTATTTTGCTTTTTAAACCAAAATATTGCACAGAAACTTC 2310170 Query 37285 CAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAAC 37344 || ||| ||||| ||||| || |||| ||| || | | | | |||| ||| Sbjct 2310169 CACTAAATAAAATTCCTTCTACGCATGCATTTGCCACTATCCTTTCTGC-AAAG--GAAT 2310113 Query 37345 TATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTT 37404 || |||| |||||||| || ||| ||| || ||| ||| | || ||| Sbjct 2310112 TAGTATCATTTATCCATTTGGCTGCCCATAATGCTTTATTTTTTACAGCTGGTATATTTT 2310053 Query 37405 CAATTGCTTTTAAGAGA---AAGtttttttCTTCACTATCTGTTATATAAGTATCAATTA 37461 | || || | || | | || ||| || |||| || |||| ||| ||||||||| Sbjct 2310052 CTATAGCATGAAATAAATTCAATCTTTCTTTTTCA---TCCTTTATGTAATTATCAATTA 2309996 Query 37462 GTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACC 37521 |||||| || |||| || || |||||||||| |||||| |||||| |||||| Sbjct 2309995 ATAAACTGTATGTTTCGGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTT 2309936 Query 37522 TAGCTTCAGATAATTGAACAT--CGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTAT 37579 | || || | | |||||| | ||| |||||| | ||||||| ||||| ||| || Sbjct 2309935 TTGCCTCTGTAATTTGAACTTGTCGT--AAAAACTTACTAGCTAAATTTTCCAAAACAAT 2309878 Query 37580 CCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGA 37639 |||||||| |||||||| || || | ||||| |||||||||||| |||||| || Sbjct 2309877 TCCATCACTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGCTTTTCATTATCATT 2309818 Query 37640 TAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 |||||||| |||| || | ||| | |||||||| | ||| || | |||||||| Sbjct 2309817 TAATTTTTCGAAATCTTTTAAATCACTCGATAAATCTATTTCCTCCGCTGTCCAAAA 2309761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592311298857720