Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq13 298 3e-76 >seq13 Length=2538962 Score = 298 bits (330), Expect = 3e-76 Identities = 465/657 (71%), Gaps = 21/657 (3%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 ||||||||| | |||| ||||| ||||| | |||| | | |||||| | |||||| Sbjct 814807 ATTTGGACACATTAAAGTCCAATTTTTATTTTCTTTAACTCTTTTCATAAAAAGATCTGG 814748 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 || ||||| ||||| || | ||||| ||||| | |||||||||||| ||||| ||| | Sbjct 814747 AACCCACACAGCATAGAAAAGATCTCGAGCTCTTAATTCTTCTTTTCCATGATTTTTTCT 814688 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 || |||||| || |||||||| || || ||||||||||| | || | ||||||| || Sbjct 814687 TAAATCTAAAAATTCAAAAATGTCAGAATGCCATGGTTCAATGTATACAGCAAAAGATCC 814628 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 ||||||||| ||||| ||||||||||| ||||| ||||| |||||||| ||| | | ||| Sbjct 814627 TTTTCTTTTCCCTCCTCCTTGATCTACATATCTAGCAGTATCATTGAATACTCTTAGCAT 814568 Query 26128 TGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCT-TGGATCCTGTCGATCTAA 26186 || |||||||| | || | ||| || || | ||| | || || || | ||| | Sbjct 814567 AGGTACTAATCCGTTGGATATTCCATTCGTTCCTCTAATATATGAATTTTGAC-CTCTTA 814509 Query 26187 TATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAA 26246 |||| || | || || || |||||||| ||| ||| |||||| | | | Sbjct 814508 TATCTTGCACTGCAACTCCAATACCACCAGCTGTTTTGCTAATTAATGCACATTGTTTCA 814449 Query 26247 CTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATA 26306 ||| ||||||||||||| ||| ||| ||||||| |||||||||||| ||||| | Sbjct 814448 ATGTTTCGAAAATTCCTTCTATCGAATCTGATTTCATTGATAATAAAAAACACGAAGACA 814389 Query 26307 ATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATA--TCC 26364 ||| | | ||||| ||||| |||||||| || || ||||| || |||| || Sbjct 814388 TTTGTGGTCTTGGAGTTCCAGAATTGAATAATGTAGGAGTTGCATGTGTGAAATATTTCT 814329 Query 26365 TTCACTCAAAGCTGTATAAGTTTCAAGAACTTCATCGATATTGTAATTACTAACTTCAAT 26424 | || ||| || ||| |||||||| ||| || | || || | || | | |||| Sbjct 814328 GTGACATTAAG-TG-ATATGTTTCAAGTGCTTTTTCCAAATCGTCAATATGGATTCCAAT 814271 Query 26425 AGCTGTTCTTAACCACATATATTGAGGTCGTTCAATTACATTATTTTCCGCATCTCTAAT 26484 || | ||| | ||| || ||| |||| |||| || ||||||| ||| |||| Sbjct 814270 AGATACTCTCATTAACAAATGTTGTGGTCTTTCA-----ATAATTTTCC-CAT---TAAT 814220 Query 26485 ------CAAATAAGATTTTTCTAAAGTTTTCAATCCAAAATAATCATGATTGAAATC 26535 ||||| || |||||| || || || ||||| ||||||| ||||||||| Sbjct 814219 GCGTAGTAAATATGACCGTTCTAATGTCTTAAAACCAAAGTAATCATAATTGAAATC 814163 Score = 98.7 bits (108), Expect = 5e-16 Identities = 463/718 (64%), Gaps = 32/718 (4%) Strand=Plus/Minus Query 24982 AAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCT-TA 25040 ||||||| | | || ||| ||| | | | |||||||||| || ||| | ||| || Sbjct 815686 AAGATCTTTTAGCAGATGTGGATTAACTACGAAAAATTCTCCACTCAGAACACGTCTGTA 815627 Query 25041 TTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAG 25100 | | | ||| ||| |||||||||| ||||||||||||| | ||||| ||||||| Sbjct 815626 GT-AGATGTTACTAGTATATGGTTCAAAGGATTCATTATTTCCCAGAATTTGCGAAGTAG 815568 Query 25101 ATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTT 25160 |||| ||||||||| || | | || ||||| ||||| |||| ||| || | | Sbjct 815567 ATGCAGTTGGCATTGGAGCCAGAAGTAATGAATTCCTCAATCCATGTTTCTTTAT-TTTA 815509 Query 25161 GT-TTTAATTTATCCCAA-TCTA--AATTATTATCTAACTCGATATCGTTATCATATAAA 25216 || |||| || ||||||| || | | |||||||| | || | || || | | Sbjct 815508 GTCTTTAGTTCATCCCAATTCCAATATTTATTATCAACCTTTACAT-----TC-CACATG 815455 Query 25217 TCAAATTGTAACAATCC---ACTTGCTGCAGGCGATTGATCAAAAGTTGAATATTTACCT 25273 ||||||||||| | ||| ||| |||| | |||| | ||| ||| || Sbjct 815454 TCAAATTGTAAAATTCCTTGACTAGCTGGACTACCCTGAT---ATGTTTCATAAGGTCCA 815398 Query 25274 TTTGTTATTGCCATATCTTTTGATTGCTCTAACGCAGCATAATACATATTTTCAAAAATC 25333 | | |||| || | || || || ||||||||||||||| |||||||||| Sbjct 815397 TACACTTGAGCCAATTCCATAGACATTTCCAAAGCAGCATAATACATAGTTTCAAAAATT 815338 Query 25334 GCTTTGTTTAAAAACTTAGCTTTTTCTCCATCGAAAGCAATTTC-CATTAAGGCGAACGT 25392 ||| ||||| ||||| ||| || | || || || | ||| || || Sbjct 815337 CTTTTATTTAATTCTTTAGCAGAATCT-GATTCATAGGGATATCTTAATAACATAAAAGT 815279 Query 25393 ATCTGCTAATCCCTGAACTCCTAATCCAACTGGACGATGTTTATTATTACTTATCTCAGT 25452 ||| || ||||| ||||| |||| ||| | ||| | |||| | |||| | | || Sbjct 815278 ATCAGCCAATCCTTGAACCCCTATTCCTATTGGTCTATGTCTTGTATTGGATCTTCTAGC 815219 Query 25453 TTCTGATGTTGGATAGAAATTTGTATCGATCACATTATCTAGATTCTTTATGGCAAGCTT 25512 |||| ||| || ||||| | || || | ||||| | || || || | || Sbjct 815218 TTCTTCAACTGGGTAATAATTTCTTTCTATAATTTTATCCAAAT--TTCGTGTAATAATT 815161 Query 25513 TGTGTATTTTCTCAACTCAATAAAGTCAAAATAAGGCTTATCGTTTATATCTCTTTTTAC 25572 | |||| ||| || | | | ||| ||| || ||| | ||| | | ||| Sbjct 815160 TTTGTAATTTGGTAA---AGTTTCTTAAAATTAA----ATTCTTTTTTCTCTGTATCTAC 815108 Query 25573 AAATTTAGATAAAGCGATTGATGCTAAATTACAAACAGCTTGTTCTTTCCCGTCA-GAAT 25631 |||||| |||| || || ||||| | |||||| ||||| ||| || | | | | Sbjct 815107 AAATTTGCATAATGCTATAGATGCCAGATTACATACAGCAACTTC-ATCAGGAGATGTGT 815049 Query 25632 ATTCATTGATCTCGATACATAAGTTGCTAGATTTGATTACTCCATAATTCTTTTGATT 25689 ||||| | ||||| ||||||||| ||| |||| || ||| |||| || ||||| Sbjct 815048 ATTCAATAATCTCACAACATAAGTTACTACATTTTATAGTTCCTAAATTTTTCTGATT 814991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253037708643725