Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq13 188 1e-42 seq11 172 1e-37 >seq13 Length=2538962 Score = 188 bits (208), Expect = 1e-42 Identities = 182/234 (78%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 193127 TTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATA 193186 ||| | ||||||||| || || || || | ||| || |||| || || |||||||| Sbjct 759185 TTAAAAACCACCTCTTAAACGGAGAACTAAATGTAAAGTAGATTCCTTTTGGATATTATA 759126 Query 193187 GTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATC 193246 || ||||| ||||| ||| |||||||||||||| ||||| |||||||| || || || Sbjct 759125 ATCTGATAATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGCTGGTC 759066 Query 193247 AGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGA 193306 ||| || ||||||||||||||||||||||| | || | ||| ||| || || || || Sbjct 759065 AGGTGGAATTCCTTCTTTATCTTGTATTTTAGCCTTGACGTTTTCAATTGTGTCTGATGA 759006 Query 193307 CTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| ||||| || || ||||| ||||||| || |||||||| |||||||| Sbjct 759005 CTCAACGTCTAGTGTGATGGTTTTTCCTGTTAAAGTCTTTACAAAAATTTGCAT 758952 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| || || || || | ||| || || | || || ||||| Sbjct 758960 AATTTGCATACCACCTCTTAAACGGAGAACTAAATGTAAAGTTGATTCCTTTTGGATATT 758901 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || ||||| ||||| ||| |||||||||||||| ||||| |||||||| || || Sbjct 758900 ATAATCTGATAATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGCTG 758841 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||| || ||||||||||||||||||||||| | || | ||| ||| ||||| || Sbjct 758840 GTCAGGTGGAATTCCTTCTTTATCTTGTATTTTAGCCTTGACGTTTTCAATTGTATCTGA 758781 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTG 193335 |||||||| || || || || ||||| |||| Sbjct 758780 TGACTCAACGTCCAGTGTGATGGTTTTTCCTG 758749 >seq11 Length=2227116 Score = 172 bits (190), Expect = 1e-37 Identities = 166/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 193151 TACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTC 193210 ||||| ||| || || | ||| || ||| |||||||| | ||| ||||| ||| || Sbjct 206674 TACCAAATGTAAAGTGGACTCCTTCTGAATGTTATAGTCAGCTAATGTTCTGCCATCTTC 206615 Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 || ||||||||| ||||| ||||||||||||||||| || || |||||||| |||||||| Sbjct 206614 TAGTTGTTTTCCTGCAAATATTAATCTCTGTTGATCGGGTGGAATTCCTTCCTTATCTTG 206555 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 ||||| | || | ||| ||| ||||| || ||||| || || || || || ||||| Sbjct 206554 AATTTTTGCCTTAACATTCTCAATCGTATCAGATGACTCGACATCAAGGGTGATGGTTTT 206495 Query 193331 ACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || |||| |||||||| |||||||||||||| Sbjct 206494 TCCGGTTAATGTTTTTACGAATATTTGCATTTT 206462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899646044459760