Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq13 210 3e-49 seq11 107 3e-18 >seq13 Length=2538962 Score = 210 bits (232), Expect = 3e-49 Identities = 485/722 (67%), Gaps = 16/722 (2%) Strand=Plus/Minus Query 17983 TAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAG 18042 ||||| ||| || |||||||||| ||| || ||||| || ||||||| || | || Sbjct 2310450 TAATCGATCAGCGACAAATTCGATATACTGAGACATTAATCTAGAATTCATCCCAATTAA 2310391 Query 18043 TCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTAT 18102 |||| | || || |||||| | | |||| || || | |||||| | || Sbjct 2310390 ATCACAAGGCAAAGATTCGCATATAAATGATCTTTCTACTTCTACTGCCTCTTTAACGAT 2310331 Query 18103 GTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAA--TAAACAC 18160 || || || ||| |||||||| || | | || | ||||| |||||| Sbjct 2310330 ATTCTGCACAACTTCTTCTGGTAATTTATT--TTCT---AATAAACTATAAATTAAACAG 2310276 Query 18161 GCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCG 18220 |||||| ||||||| |||||||||| || ||||| ||||| || || || || Sbjct 2310275 TTAAAATCTGTGTGTAGTCCTTCATCTCGACTAATCAATTCATTACTGAATGTCAATCCA 2310216 Query 18221 GGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATA 18280 | | || | ||||| | ||||||||| | |||||| | | ||| || || Sbjct 2310215 TGTAACTTATTTTGCTTTTTAAACCAAAATATTGCACAGAAACTTCCACTAAATAAAATT 2310156 Query 18281 CCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT-AT 18339 || || ||||| || || | || ||||| ||||| | | ||| | ||| | || Sbjct 2310155 CCTTCTACGCATGCATTTGCCACTATCCTTTCTGCAAA---GGAATTAGTA-TCATTTAT 2310100 Query 18340 CCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAA 18399 |||||| ||||||| | ||| | | |||||| | |||||||||| ||| Sbjct 2310099 CCATTTGGCTGCCCATAATGCTTTATTTTTTACAGCTGGTATATTTTCTATAGCATGAAA 2310040 Query 18400 CAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTC 18459 |||| | ||||||| ||| ||||| ||| | || ||||| ||| || |||| Sbjct 2310039 TAAATTCAATCTTTCTTTTTCATCCTTTATGTAATTATCAATTAATAAACTGTATGTTTC 2309980 Query 18460 AGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTG 18519 |||||||| |||| | |||||| |||||| |||||| | | ||||| | | ||| Sbjct 2309979 GGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCCTCTGTAATTTG 2309920 Query 18520 AATCTCGCTATAAAATCTTTCTACC-AAATTCTCATTAACTATACCGTCAGCAGATGCGA 18578 || || | ||||| ||| ||| | ||||| || ||| || || ||| | ||| | Sbjct 2309919 AA-CTTGTCGTAAAAACTTACTAGCTAAATTTTCCAAAACAATTCCATCACTTGCTGCAA 2309861 Query 18579 AAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTC-CATTCA 18637 ||||||| ||||||| ||| || ||||| ||||||||||| || | ||| ||| | || Sbjct 2309860 AAAATGCTAAAACATGTTTTATAAAATGCTTTTCATTATCATTTA-ATTTTTCGAAATCT 2309802 Query 18638 TCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTG 18697 | || ||| | |||| ||| | ||| |||| ||||||||| |||| ||| || | ||| Sbjct 2309801 TTTAAATCACTCGATAAATCTATTTCCTCCGCTGTCCAAAATGATGCTTCTGCTTTTTTA 2309742 Query 18698 TA 18699 || Sbjct 2309741 TA 2309740 Score = 136 bits (150), Expect = 6e-27 Identities = 174/238 (73%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || || || |||||||| || ||| |||| || || || Sbjct 758952 ATGCAAATTTTTGTAAAGACTTTAACAGGAAAAACCATCACACTAGACGTTGAGTCATCA 759011 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| || ||||||||||||||||||||| || || || || || Sbjct 759012 GACACAATTGAAAACGTCAAGGCTAAAATACAAGATAAAGAAGGAATTCCACCTGACCAG 759071 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| || | ||| || || || | |||||| ||||| ||||||||||||| Sbjct 759072 CAAAGATTAATATTTGCAGGAAAACAATTAGAAGATGGAAGAACATTATCAGATTATA-- 759129 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAAAATT 156058 ||||||||| || | || | |||||||| | | |||||||| ||| | |||| Sbjct 759130 ATATCCAAAAGGAATCTACTTTACATTTAGTTCTCCGTTTAAGAGGTGGTTTTTAATT 759187 Score = 118 bits (130), Expect = 2e-21 Identities = 149/203 (73%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 155850 GGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAA 155909 |||||||| || ||| | || || || || |||| ||| |||||| || |||| Sbjct 758751 GGAAAAACCATCACACTGGACGTTGAGTCATCAGATACAATTGAAAACGTCAAGGCTAAA 758810 Query 155910 ATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAG 155969 ||||||||||||||||| || || || || || |||||||| || | ||| || || || Sbjct 758811 ATACAAGATAAAGAAGGAATTCCACCTGACCAGCAAAGATTAATATTTGCAGGAAAACAA 758870 Query 155970 CTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCATT 156027 | |||||| ||||| ||||||||||||| ||||||||| || | || | |||| Sbjct 758871 TTAGAAGATGGAAGAACATTATCAGATTATA--ATATCCAAAAGGAATCAACTTTACATT 758928 Query 156028 TAGTGTTAAGATTAAGAGGCGGT 156050 |||| | | |||||||| ||| Sbjct 758929 TAGTTCTCCGTTTAAGAGGTGGT 758951 >seq11 Length=2227116 Score = 107 bits (118), Expect = 3e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| | |||||||| || |||||||| || || | || ||||| ||| Sbjct 206465 ATGCAAATATTCGTAAAAACATTAACCGGAAAAACCATCACCCTTGATGTCGAGTCATCT 206524 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || ||||| |||||||| ||||| || || || || ||| Sbjct 206525 GATACGATTGAGAATGTTAAGGCAAAAATTCAAGATAAGGAAGGAATTCCACCCGATCAA 206584 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||| || | ||| || || || || |||||| |||||| ||| | || ||||| Sbjct 206585 CAGAGATTAATATTTGCAGGAAAACAACTAGAAGATGGCAGAACATTAGCTGACTATAAC 206644 Query 156003 AT 156004 || Sbjct 206645 AT 206646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731865202738800