Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq13 286 7e-72 seq11 165 2e-35 >seq13 Length=2538962 Score = 286 bits (316), Expect = 7e-72 Identities = 500/724 (69%), Gaps = 20/724 (3%) Strand=Plus/Minus Query 49649 TAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAA 49708 ||||| ||| || |||||||| | ||| || ||||||||| | ||||||| || | ||| Sbjct 2310450 TAATCGATCAGCGACAAATTCGATATACTGAGACATTAATCTAGAATTCATCCCAATTAA 2310391 Query 49709 TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 49768 | | | || || | || |||||| | |||||| |||||| || | ||||| || Sbjct 2310390 ATCACAAGGCAAAGATTCGCATATAAATGATCTTTCTACTTCTACTGCCTCTTTAACGAT 2310331 Query 49769 cataattatattattttttgataatttatatt-taatatgattcgcatatattaaACATG 49827 | | | | || || |||||||| || ||||| | ||| |||||||| Sbjct 2310330 ATTCTGCACAACTTCTTCTGGTAATTTATTTTCTAATAAACT----ATAAATTAAACAGT 2310275 Query 49828 CAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC-T 49886 |||||| || |||| || || || | | || ||||||||||| || || ||||| | Sbjct 2310274 TAAAATCTGTGTGTAGTCCTTCATCTCGACTAATCAATTCATTACTGAATGTCAATCCAT 2310215 Query 49887 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATA 49946 | | | || | |||||||| ||||||||||| ||||| | | ||| || || Sbjct 2310214 GTAACTTATTTTG-CTTTTTAAACCAAAATATTGCACAGAAACTTCCACTAAATAAAATT 2310156 Query 49947 CCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATT--TATCATCTAATA 50004 || || || || ||| ||| | ||| ||| || |||| |||| |||||| || Sbjct 2310155 CCTTCTACGCATGCATTTGCCACTATCCTTTCTGCAAAGG--AATTAGTATCATTTA--- 2310101 Query 50005 TCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAA 50064 |||| || ||||| |||||| ||||| | || ||||||||||||||||| | || Sbjct 2310100 TCCATTTGGCTGCCCATAATGCTTTATTTTTTACAGCTGGTATATTTTCTATAGCATGAA 2310041 Query 50065 ATAA-TTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATT 50123 |||| |||| | ||| | | ||||||||| || || Sbjct 2310040 ATAAATTCAATCTTT-CTTTTTCATCCTTTATGTAATTATCAATTAATAAACTGTATGTT 2309982 Query 50124 TCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATAC 50183 || ||||||| | ||| | |||||||||||| |||||||||| | |||| |||| | Sbjct 2309981 TCGGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCCTCTGTAATT 2309922 Query 50184 TGAACTT--CGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTG 50241 ||||||| || |||| | | | ||||||| || | ||||| |||||| ||||| Sbjct 2309921 TGAACTTGTCGTAAAAACTTACT--AGCTAAATTTTCCAAAACAATTCCATCACTTGCTG 2309864 Query 50242 CGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAG 50301 | || ||||||||||| | ||| |||||||| ||||||||||| ||||| ||||| || Sbjct 2309863 CAAAAAATGCTAAAACATGTTTTATAAAATGCTTTTCATTATCATTTAATTTTTCGAAAT 2309804 Query 50302 ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTT 50361 || | ||| | |||||||||| ||| || |||||||||||||||| | | ||||| Sbjct 2309803 CTTTTAAATCACTCGATAAATCTATTTCCTCCGCTGTCCAAAATGATGCTTCTGCTTTTT 2309744 Query 50362 TATA 50365 |||| Sbjct 2309743 TATA 2309740 Score = 192 bits (212), Expect = 1e-43 Identities = 181/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 || ||||||||| | ||| | |||||||||||||||| || || |||||||||||| Sbjct 759182 AAAACCACCTCTTAAACGGAGAACTAAATGTAAAGTAGATTCCTTTTGGATATTATAATC 759123 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 |||||||||| | |||| || |||||||| || ||||| |||||||| || || ||||| Sbjct 759122 TGATAATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGCTGGTCAGG 759063 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| |||||||||||||||||||||||| || || || || | ||||| || || Sbjct 759062 TGGAATTCCTTCTTTATCTTGTATTTTAGCCTTGACGTTTTCAATTGTGTCTGATGACTC 759003 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || |||||||| || ||||| || || | ||| || ||||| Sbjct 759002 AACGTCTAGTGTGATGGTTTTTCCTGTTAAAGTCTTTACAAAAATTTGCAT 758952 Score = 172 bits (190), Expect = 1e-37 Identities = 160/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | ||| | |||||||||||||| | || || |||||||||||| Sbjct 758953 ATACCACCTCTTAAACGGAGAACTAAATGTAAAGTTGATTCCTTTTGGATATTATAATCT 758894 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||||| | |||| || |||||||| || ||||| |||||||| || || |||||| Sbjct 758893 GATAATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGCTGGTCAGGT 758834 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||||||||||||||||||| || || || || | |||||| || || Sbjct 758833 GGAATTCCTTCTTTATCTTGTATTTTAGCCTTGACGTTTTCAATTGTATCTGATGACTCA 758774 Query 192487 ACTTCTAGAGTAATGGTTTTACC 192509 || || || || |||||||| || Sbjct 758773 ACGTCCAGTGTGATGGTTTTTCC 758751 >seq11 Length=2227116 Score = 165 bits (182), Expect = 2e-35 Identities = 171/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 192324 TAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATC 192383 || ||| ||||||||||| | ||| || || ||||| |||| |||||||| |||| Sbjct 206677 TATTACCAAATGTAAAGTGGACTCCTTCTGAATGTTATAGTCAGCTAATGTTCTGCCATC 206618 Query 192384 ATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATC 192443 || | |||||| || ||||| ||||||||||||||||| ||||| |||||||| ||||| Sbjct 206617 TTCTAGTTGTTTTCCTGCAAATATTAATCTCTGTTGATCGGGTGGAATTCCTTCCTTATC 206558 Query 192444 TTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGT 192503 ||| ||||| || ||||| || | ||| || || || || || || || ||||| Sbjct 206557 TTGAATTTTTGCCTTAACATTCTCAATCGTATCAGATGACTCGACATCAAGGGTGATGGT 206498 Query 192504 TTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGAAA 192547 ||| || ||||||||||| | ||||| |||||||| || ||| Sbjct 206497 TTTTCCGGTTAATGTTTTTACGAATATTTGCATTTTGGTAAAAA 206454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984470628058050