Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq13 253 4e-62 seq11 156 8e-33 >seq13 Length=2538962 Score = 253 bits (280), Expect = 4e-62 Identities = 566/850 (67%), Gaps = 30/850 (4%) Strand=Plus/Minus Query 38830 ATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTA 38889 |||| || || || | |||| ||||| ||||| ||||||||||||| || ||||| | Sbjct 2310571 ATTTCTGATAATCTGCAACTCGCTTTTCAAAAAAATTTGTTTTTCCTTGTAGGGATATGA 2310512 Query 38890 AATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTT-----CTCCTATCAATAC 38944 || ||| | | |||||||| || | || || ||||| | || | || | | Sbjct 2310511 GATCCATCCAGTTGAATGGATTCTTTGAATGGAAA-ATTTTGGAAGACCCCAAACATTCC 2310453 Query 38945 ATATAATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACC 39004 | ||||| ||| || |||||||| | ||| || |||||||| | ||||||| || Sbjct 2310452 AG----TAATCGATCAGCGACAAATTCGATATACTGAGACATTAATCTAGAATTCATCCC 2310397 Query 39005 CAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgttt 39064 | ||| | | | || || | || |||||| | |||||| |||||| || | ||| Sbjct 2310396 AATTAAATCACAAGGCAAAGATTCGCATATAAATGATCTTTCTACTTCTACTGCCTCTTT 2310337 Query 39065 aattatcataattatattattttttgataatttatatt-taatatgattcgcatataGTA 39123 || || | | | | || || |||||||| || ||||| | ||| | || Sbjct 2310336 AACGATATTCTGCACAACTTCTTCTGGTAATTTATTTTCTAATAAACT----ATAAATTA 2310281 Query 39124 AACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTA 39183 |||| |||||| || |||| ||||| || | | || ||||||||||| || || | Sbjct 2310280 AACAGTTAAAATCTGTGTGTAGTCCTTCATCTCGACTAATCAATTCATTACTGAATGTCA 2310221 Query 39184 ATCC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAG 39242 |||| || | | || | |||||||| ||||||||||| ||||| | | ||| Sbjct 2310220 ATCCATGTAACTTATTTTG-CTTTTTAAACCAAAATATTGCACAGAAACTTCCACTAAAT 2310162 Query 39243 AATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATT--TATCAT 39300 || || || || || || ||| ||| | ||| ||| || |||| |||| |||||| Sbjct 2310161 AAAATTCCTTCTACGCATGCATTTGCCACTATCCTTTCTGCAAAGG--AATTAGTATCAT 2310104 Query 39301 CTAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAG 39360 || |||| || ||||| |||||| ||||| | || |||||||||||||||| Sbjct 2310103 TTA---TCCATTTGGCTGCCCATAATGCTTTATTTTTTACAGCTGGTATATTTTCTATAG 2310047 Query 39361 CTTTAAATAA-TTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAA 39419 | | |||||| |||| | Sbjct 2310046 CATGAAATAAATTCA-ATCTTTCTTTTTCATCCTTTATGTAATTATCAATTAATAAACTG 2309988 Query 39420 TACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCT 39479 || |||| ||||||| | ||| | |||||||||||| |||||||||| |||| ||| Sbjct 2309987 TATGTTTCGGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCCTCT 2309928 Query 39480 GAATACTGAACTT--CGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAG 39537 | | ||||||| || |||| | | | ||||||| || | ||||| |||||| Sbjct 2309927 GTAATTTGAACTTGTCGTAAAAACTTACT--AGCTAAATTTTCCAAAACAATTCCATCAC 2309870 Query 39538 ATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTT 39597 |||||| || ||||||||||||| ||| |||||||| ||||||||||| ||||| |||| Sbjct 2309869 TTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGCTTTTCATTATCATTTAATTTTT 2309810 Query 39598 CCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGG 39657 | || || | ||| | |||||||||| ||| || ||||||||| |||||| | | Sbjct 2309809 CGAAATCTTTTAAATCACTCGATAAATCTATTTCCTCCGCTGTCCAAAATGATGCTTCTG 2309750 Query 39658 ATTTTTTATA 39667 ||||||||| Sbjct 2309749 CTTTTTTATA 2309740 Score = 178 bits (196), Expect = 2e-39 Identities = 178/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || ||||||||| | || | |||||||||||||||| || || ||||||||||| Sbjct 759182 AAAACCACCTCTTAAACGGAGAACTAAATGTAAAGTAGATTCCTTTTGGATATTATAATC 759123 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 |||||| | || | | || || |||||||| || ||||| |||||||| || |||||||| Sbjct 759122 TGATAATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGCTGGTCAGG 759063 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| |||||||||||||||||||||||| || || || || || ||||| || || Sbjct 759062 TGGAATTCCTTCTTTATCTTGTATTTTAGCCTTGACGTTTTCAATTGTGTCTGATGACTC 759003 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || |||||||| || ||||| || || | || || ||||| Sbjct 759002 AACGTCTAGTGTGATGGTTTTTCCTGTTAAAGTCTTTACAAAAATTTGCAT 758952 Score = 163 bits (180), Expect = 5e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || | |||||||||||||| | || || |||||||||||| Sbjct 758953 ATACCACCTCTTAAACGGAGAACTAAATGTAAAGTTGATTCCTTTTGGATATTATAATCT 758894 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | | || || |||||||| || ||||| |||||||| || ||||||||| Sbjct 758893 GATAATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGCTGGTCAGGT 758834 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||||||||||||||||||| || || || || |||||||| || || Sbjct 758833 GGAATTCCTTCTTTATCTTGTATTTTAGCCTTGACGTTTTCAATTGTATCTGATGACTCA 758774 Query 172020 ACTTCTAGAGTAATGGTTTTACC 172042 || || || || |||||||| || Sbjct 758773 ACGTCCAGTGTGATGGTTTTTCC 758751 >seq11 Length=2227116 Score = 156 bits (172), Expect = 8e-33 Identities = 169/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 171857 TAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTC 171916 || ||| ||||||||||| | ||| || ||| ||||| || | ||| | || | || Sbjct 206677 TATTACCAAATGTAAAGTGGACTCCTTCTGAATGTTATAGTCAGCTAATGTTCTGCCATC 206618 Query 171917 ATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATC 171976 || | |||||| || ||||| |||||||||||||| || ||||| |||||||| ||||| Sbjct 206617 TTCTAGTTGTTTTCCTGCAAATATTAATCTCTGTTGATCGGGTGGAATTCCTTCCTTATC 206558 Query 171977 TTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGT 172036 ||| ||||| || ||||| || ||||| || || || || || || || ||||| Sbjct 206557 TTGAATTTTTGCCTTAACATTCTCAATCGTATCAGATGACTCGACATCAAGGGTGATGGT 206498 Query 172037 TTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTATAAA 172080 ||| || ||||||||||| | |||||| |||||||| || ||| Sbjct 206497 TTTTCCGGTTAATGTTTTTACGAATATTTGCATTTTGGTAAAAA 206454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905127593549400